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[186735_s_at]

Description ZK1248.14 /REP_DB=WormBase Gene ID /WP=CE02898 /TR=Q23424 /GB=AAC71095.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 34      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 75      6grp_total > 0      4grp_total > 55      6grp_total_sub > Hat      6grp_highest_sub > 02      6grp_cgc > 63      6grp_high1_sub > 02      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 461
1 2 3 4 range
A 1046.4
(3)
P 		981.7
(2)
P 		846.6
(-0.1)
P 		665.7
(-3)
P 		381
B 1087.2
(3)
P 		725.5
(-3)
P 		735.7
(-2.8)
P 		831.4
(-1.2)
P 		362
C 1055.3
(3)
P 		626
(-3)
P 		885.4
(0.6)
P 		719.8
(-1.7)
P 		429
avr 1063
(3) 		777.7
(-2.3) 		822.6
(-1.5) 		739
(-3) 		324

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 526
1 2 3 4 5 6 range
A 637.4
(-3)
P 		1103.1
(3)
P 		747.3
(-1.6)
P 		1014.7
(1.9)
P 		820.8
(-0.6)
P 		1037.4
(2.2)
P 		466
B 769.6
(-2.4)
P 		970.9
(3)
P 		747.3
(-3)
P 		820.4
(-1)
P 		838.3
(-0.6)
P 		773.2
(-2.3)
P 		224
C 1163.2
(3)
P 		853.8
(-2.6)
P 		1064.7
(1.2)
P 		973.5
(-0.4)
P 		959.9
(-0.7)
P 		829.4
(-3)
P 		334
avr 856.7
(-2.8) 		975.9
(3) 		853.1
(-3) 		936.2
(1.1) 		873
(-2) 		880
(-1.7) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 284
1 2 3 4 range
A 381
(3)
P 		213.1
(-0.6)
P 		221.3
(-0.4)
P 		97.4
(-3)
P 		284
B 346.7
(3)
P 		179.2
(-2.7)
P 		170.5
(-3)
P 		177.2
(-2.8)
P 		176
C 349.3
(3)
P 		180
(-1.5)
P 		308.6
(1.9)
P 		121.4
(-3)
P 		228
avr 359
(3) 		190.8
(-1.4) 		233.5
(-0.3) 		132
(-3) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 117.5
(-3)
P 		392.3
(3)
P 		162.7
(-2)
P 		257.4
(0.1)
P 		247.7
(-0.2)
P 		252.6
(-0.1)
P 		275
B 267.8
(0.3)
P 		323.2
(2.3)
P 		181.5
(-3)
P 		217.3
(-1.6)
P 		340.6
(3)
P 		288.3
(1)
P 		159
C 431.2
(3)
P 		260.5
(-1.4)
P 		271
(-1.1)
P 		195.8
(-3)
P 		310.6
(-0.1)
P 		277.6
(-0.9)
P 		235
avr 272.2
(0.3) 		325.3
(3) 		205.1
(-3) 		223.5
(-2.1) 		299.6
(1.7) 		272.8
(0.4) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186735_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5620
Sequence Type Exemplar sequence
Representative Public ID ZK1248.14 NCBI
Target Description ZK1248.14 /REP_DB=WormBase Gene ID /WP=CE02898 /TR=Q23424 /GB=AAC71095.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062760(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062760 NCBI Caenorhabditis elegans FZO (Fzo mitochondrial fusion protein) related family member (fzo-1) (fzo-1) mRNA, complete cds. 11/11 None
SNAP00000041380 ENSEMBL cdna:SNAP chromosome:CEL140:II:5833505:5836165:-1 11/11 None
GENEFINDER00000041401 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5833505:5836165:-1 11/11 None
ZK1248.14.2 ENSEMBL cdna:known chromosome:CEL140:II:5833303:5836178:-1 gene:ZK1248.14 11/11 None
ZK1248.14.1 ENSEMBL cdna:known chromosome:CEL140:II:5833303:5836168:-1 gene:ZK1248.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5833501-5836162(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol fzo-1
Ensembl ZK1248.14
Entrez Gene 173990 Entrez gene
SwissProt Q23424 EMBL-EBI
WormBase CE02898 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.18057.1.S1_AT similar to Transmembrane GTPase MFN2 (Mitofusin-2) cfa
CANINE_2:CFA.18158.2.S1_A_AT similar to Transmembrane GTPase MFN2 (Mitofusin-2) cfa
CANINE_2:CFA.18158.2.S1_S_AT similar to Transmembrane GTPase MFN2 (Mitofusin-2) cfa
CANINE_2:CFAAFFX.25249.1.S1_AT similar to Transmembrane GTPase MFN2 (Mitofusin-2) cfa
CANINE_2:CFAAFFX.25249.1.S1_S_AT similar to Transmembrane GTPase MFN2 (Mitofusin-2) cfa
DROSOPHILA_2:1625464_AT Mitochondrial assembly regulatory factor dm
DROSGENOME1:153256_AT Mitochondrial assembly regulatory factor dm
HG-U133_PLUS_2:216205_S_AT mitofusin 2 hs
HG-U133A_2:216205_S_AT mitofusin 2 hs
HG-U133A:216205_S_AT mitofusin 2 hs
HG-U133_PLUS_2:201155_S_AT mitofusin 2 hs
HG-U133A:201155_S_AT mitofusin 2 hs
HG-U133A_2:201155_S_AT mitofusin 2 hs
HU35KSUBA:W75980_AT mitofusin 2 hs
HU35KSUBA:RC_AA235765_S_AT mitofusin 2 hs
HU35KSUBD:RC_R24483_S_AT mitofusin 2 hs
U133_X3P:G7662003_3P_A_AT mitofusin 2 hs
U133_X3P:HS2.376681.1.A1_3P_AT mitofusin 2 hs
U133_X3P:HS.3363.2.S1_3P_A_AT mitofusin 2 hs
HG-U133_PLUS_2:1566105_AT mitofusin 2 hs
HG-U95AV2:34369_AT mitofusin 2 hs
HG-U95D:68083_AT mitofusin 2 hs
U133_X3P:HS2.376681.1.S1_3P_AT Mitofusin 2 hs
HG-U133_PLUS_2:1566106_AT Mitofusin 2 hs
MOE430A:1451900_AT mitofusin 2 mm
MOUSE430A_2:1451900_AT mitofusin 2 mm
MOUSE430_2:1451900_AT mitofusin 2 mm
MG-U74BV2:106606_AT mitofusin 2 mm
MG-U74CV2:166444_F_AT mitofusin 2 mm
MOE430A:1448131_AT mitofusin 2 mm
MOUSE430A_2:1448131_AT mitofusin 2 mm
MOUSE430_2:1448131_AT mitofusin 2 mm
MOUSE430_2:1441424_AT Fzo mm
MOE430B:1441424_AT Fzo mm
MU19KSUBA:TC22353_AT Fzo mm
MU19KSUBC:TC36944_AT Fzo mm
MU19KSUBC:TC36944_G_AT Fzo mm
RG-U34A:RC_AA874813_S_AT mitofusin 2 rn
RG-U34A:U41803_AT mitofusin 2 rn
RG-U34C:AA849262_S_AT mitofusin 2 rn
RAE230A:1387919_AT mitofusin 2 rn
RAT230_2:1387919_AT mitofusin 2 rn
Protein Similarities
Method ID Description E-Value
blast AAC71095 Fzo (fzo mitochondrial fusion protein) related protein 1 [Caenorhabditis elegans] ref|NP_495161.1| FZO (Fzo mitochondrial fusion protein) related family member (fzo-1) [Caenorhabditis elegans] sp|Q23424|FZO1_CAEEL Transmembrane GTPase fzo-1 0.0
blast CAE59203 Hypothetical protein CBG02514 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006884 EMBL-EBI Fzo-like conserved region 3.9E-111
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495161.1 2 617-639,641-660
ZK1248.14.2 2 617-639,641-660
ZK1248.14.1 2 617-639,641-660
SNAP00000041380 2 617-639,641-660
GENEFINDER00000041401 2 617-639,641-660
Sequence
Target Sequence 
>C. ELEGANS:186735_S_AT
gcatcattgcgtatcgaagcggccaacctgtcactgcaatcaacaccaatttgcttactc
cattatcactaaaacaacaatccgaaaagaattcagtgagagatgcagaagcttctgcag
cttccgaagaacaggcaatgatgactcaaatggttttgacatcagccgcatttttagcaa
acggaagtcttggagtgctagttgttggtggtattgtgtataaggctgttggttggagag
taattgctgtcggaggagcggcctacgctggactatatgcatgggaacgaatgcgctgga
attcgggagccaaggaacaacatttgaaagaacagttcagatcacatttagctgctcgaa
tgcaacaagtttcaacagctcatactcatcactgtgaaacacaagctatcagagaaatgg
accaagtctttgacggattgaaagcaactgttggtggagtccatagagaaatgaaaaacg
atttggatgtacagaagacacaaattgatgcagttgattcaacaattcgaacattgggaa
caatcaaaggaaaagcagtgtttcttctccgaaatctcgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCATTGCGTATCGAAGCGGCCA 701 307 1709 Antisense
ACCTGTCACTGCAATCAACACCAAT 538 87 1734 Antisense
ACACCAATTTGCTTACTCCATTATC 543 109 1751 Antisense
AGCTTCTGCAGCTTCCGAAGAACAG 427 79 1818 Antisense
ATGGTTTTGACATCAGCCGCATTTT 19 51 1858 Antisense
TAATTGCTGTCGGAGGAGCGGCCTA 654 633 1949 Antisense
CGGCCTACGCTGGACTATATGCATG 52 243 1967 Antisense
GAATGCGCTGGAATTCGGGAGCCAA 444 331 1997 Antisense
GTTCAGATCACATTTAGCTGCTCGA 268 445 2043 Antisense
AAGTTTCAACAGCTCATACTCATCA 82 157 2075 Antisense
GTGTTTCTTCTCCGAAATCTCGAAC 585 483 2266 Antisense
Sequence Source Affymetrix Proprietary Database