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[186733_at]

Description F11G11.13 /REP_DB=WormBase Gene ID /WP=CE09355 /TR=P91251 /GB=AAB37844.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 7.1
(-1.7)
A 		1.3
(-3)
A 		7.7
(-1.6)
A 		28.9
(3)
A 		28
B 4
(-2.6)
A 		2.5
(-3)
A 		26.5
(3)
A 		9
(-1.4)
A 		24
C 1
(-3)
A 		42.9
(3)
A 		25.6
(0.5)
A 		40.5
(2.7)
P 		42
avr 4
(-3) 		15.6
(0.1) 		19.9
(1.3) 		26.1
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 26.3
(3)
A 		4.6
(-2.5)
A 		11.7
(-0.7)
A 		3
(-2.9)
A 		10.7
(-1)
A 		2.7
(-3)
A 		24
B 3
(-2.9)
A 		2.1
(-3)
A 		34.4
(2)
A 		40.8
(3)
A 		32.6
(1.7)
A 		2.6
(-2.9)
A 		39
C 2.2
(-1.8)
A 		3
(-1.2)
A 		8.3
(3)
A 		1.3
(-2.5)
A 		1.5
(-2.4)
A 		0.7
(-3)
A 		8
avr 10.5
(0.2) 		3.2
(-2.6) 		18.1
(3) 		15
(1.8) 		14.9
(1.8) 		2
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.6
(0.5)
A 		0.3
(-3)
A 		2
(-0.4)
A 		4.2
(3)
A 		4
B 1.3
(-2.2)
A 		0.6
(-3)
A 		6.1
(3)
A 		1.9
(-1.6)
A 		6
C 0.3
(-3)
A 		12.3
(3)
A 		8.9
(1.3)
A 		6.8
(0.3)
P 		12
avr 1.4
(-3) 		4.4
(1.2) 		5.7
(3) 		4.3
(1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.8
(3)
A 		1.6
(-1.6)
A 		2.5
(-0.3)
A 		0.8
(-2.7)
A 		3.2
(0.7)
A 		0.6
(-3)
A 		4
B 1
(-2.9)
A 		0.7
(-3)
A 		8.3
(0.6)
A 		10.8
(1.8)
A 		13.3
(3)
A 		1
(-2.9)
A 		13
C 0.8
(-1.1)
A 		0.9
(-0.8)
A 		2.1
(3)
A 		0.3
(-2.7)
A 		0.5
(-2.1)
A 		0.2
(-3)
A 		2
avr 2.2
(-1.1) 		1.1
(-2.4) 		4.3
(1.4) 		4
(1) 		5.7
(3) 		0.6
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186733_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5594
Sequence Type Exemplar sequence
Representative Public ID F11G11.13 NCBI
Target Description F11G11.13 /REP_DB=WormBase Gene ID /WP=CE09355 /TR=P91251 /GB=AAB37844.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062480(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062480 NCBI Caenorhabditis elegans F11G11.13 (F11G11.13) mRNA, complete cds. 11/11 None
GENEFINDER00000005496 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4875266:4876418:-1 9/11 None
F11G11.13 ENSEMBL cdna:known chromosome:CEL140:II:4875266:4875688:-1 gene:F11G11.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005488 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4875263-4875686(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11G11.13
Entrez Gene 184367 Entrez gene
SwissProt P91251 EMBL-EBI
WormBase CE09355 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16301 kinase activity inferred from electronic annotation QuickGO AmiGO
16772 transferase activity, transferring phosphorus-containing groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494881 F11G11.13 [Caenorhabditis elegans] gb|AAB37844.1| Hypothetical protein F11G11.13 [Caenorhabditis elegans] 1.0E-55
blast NP_494881 F11G11.13 [Caenorhabditis elegans] gb|AAB37844.1| Hypothetical protein F11G11.13 [Caenorhabditis elegans] 8.0E-42
blast CAB00062 Hypothetical protein ZC434.8 [Caenorhabditis elegans] ref|NP_492714.1| ZC434.8 [Caenorhabditis elegans] sp|Q27535|KARG2_CAEEL Probable arginine kinase ZC434.8 (AK) 3.0E-32
blast CAE60547 Hypothetical protein CBG04174 [Caenorhabditis briggsae] 6.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 4.1E-26
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 4.1E-26
Sequence
Target Sequence 
>C. ELEGANS:186733_AT
agaggttctagcaagtaattttcaacaatcaagatattggccatatataacgtctttgaa
atcatcggttcacattaagttaccaaagatttcggcaaaggacgacttcaagaagatttg
cagtgagatgaagcttcagattcgtggaattcacggagaatattcggatttgaaggaagg
aatctatgacatctcgaacaagcaacgccttggacttactgagtatcaagccgttcgtca
gat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGGTTCTAGCAAGTAATTTTCAA 604 55 33 Antisense
ATTGGCCATATATAACGTCTTTGAA 174 3 68 Antisense
ACGTCTTTGAAATCATCGGTTCACA 372 91 82 Antisense
TCGGTTCACATTAAGTTACCAAAGA 271 291 97 Antisense
TAAGTTACCAAAGATTTCGGCAAAG 582 147 108 Antisense
GATTTCGGCAAAGGACGACTTCAAG 92 427 120 Antisense
ATTCACGGAGAATATTCGGATTTGA 218 3 181 Antisense
CATCTCGAACAAGCAACGCCTTGGA 440 211 222 Antisense
AGCAACGCCTTGGACTTACTGAGTA 184 77 233 Antisense
GACTTACTGAGTATCAAGCCGTTCG 205 369 245 Antisense
CTGAGTATCAAGCCGTTCGTCAGAT 175 237 251 Antisense
Sequence Source Affymetrix Proprietary Database