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[186732_at] 7TM chemoreceptor, srd family /// 7TM chemoreceptor, srd family

Description Y45G12C.9 /REP_DB=WormBase Gene ID /WP=CE21942 /TR=Q9N4Y6 /GB=AAF60584.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 04      6grp_cgc > 45      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 39.1
(0.3)
A 		10.3
(-2.9)
A 		9.8
(-3)
A 		62.7
(3)
A 		53
B 36.6
(-3)
A 		49.8
(-0)
A 		63.2
(3)
A 		51.3
(0.3)
A 		27
C 13.4
(-1.8)
A 		15.1
(-1.4)
A 		7.9
(-3)
A 		34.4
(3)
A 		27
avr 29.7
(-1.9) 		25.1
(-3) 		27
(-2.5) 		49.5
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 12
(-2.1)
A 		39.5
(1.7)
A 		49.2
(3)
A 		5.1
(-3)
A 		28.4
(0.2)
A 		47.7
(2.8)
A 		44
B 35.1
(1.1)
A 		44.8
(2.7)
A 		46.3
(3)
A 		12.3
(-2.9)
A 		11.5
(-3)
A 		36.4
(1.3)
A 		35
C 33.1
(0.9)
A 		48.4
(3)
A 		26.4
(-0)
A 		5
(-3)
A 		5.5
(-2.9)
A 		8.5
(-2.5)
A 		43
avr 26.7
(0.1) 		44.2
(3) 		40.6
(2.4) 		7.5
(-3) 		15.1
(-1.8) 		30.9
(0.8) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.2
(3)
A 		2.2
(-3)
A 		2.6
(-2.8)
A 		9.2
(0.5)
A 		12
B 11.7
(-1.7)
A 		12.3
(-0.8)
A 		14.7
(3)
A 		10.9
(-3)
A 		4
C 4.4
(0.3)
A 		4.4
(0.3)
A 		2.7
(-3)
A 		5.8
(3)
A 		3
avr 10.1
(3) 		6.3
(-3) 		6.7
(-2.4) 		8.6
(0.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.2
(-2.6)
A 		14
(3)
A 		10.7
(1.4)
A 		1.3
(-3)
A 		8.6
(0.4)
A 		11.6
(1.9)
A 		13
B 12.2
(1.6)
A 		14.9
(3)
A 		11.2
(1.1)
A 		3.3
(-3)
A 		4.7
(-2.3)
A 		13.6
(2.3)
A 		12
C 12.3
(1.9)
A 		14.8
(3)
A 		6.7
(-0.5)
A 		1
(-3)
A 		1.8
(-2.7)
A 		2.8
(-2.2)
A 		14
avr 8.9
(0.3) 		14.6
(3) 		9.5
(0.6) 		1.9
(-3) 		5
(-1.5) 		9.3
(0.5) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186732_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15715
Sequence Type Exemplar sequence
Representative Public ID Y45G12C.9 NCBI
Target Description Y45G12C.9 /REP_DB=WormBase Gene ID /WP=CE21942 /TR=Q9N4Y6 /GB=AAF60584.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071264(11), NM_071291(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071264 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-71) (srd-71) mRNA, complete cds. 11/11 A 
NM_071291 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-72) (srd-72) mRNA, complete cds. 11/11 A 
C13B7.4 ENSEMBL cdna:known chromosome:CEL140:V:2423115:2426034:-1 gene:C13B7.4 11/11 A 
Y45G12C.9 ENSEMBL cdna:known chromosome:CEL140:V:2531394:2534313:-1 gene:Y45G12C.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022916 8/11 Cross Hyb Matching Probes None
GENEFINDER00000022922 7/11 Cross Hyb Matching Probes None
SNAP00000043309 8/11 Cross Hyb Matching Probes None
GENEFINDER00000043325 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2423114-2426034(-) 100.0 100.0
chrV:2531393-2534313(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
7TM chemoreceptor, srd family
Gene Symbol srd-71
srd-72
Ensembl C13B7.4
Y45G12C.9
Entrez Gene 182562 Entrez gene
189937 Entrez gene
SwissProt Q9N4Y6 EMBL-EBI
WormBase CE21942 Wormbase
CE21942 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6979 response to oxidative stress inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD14706 Serpentine receptor, class d (delta) protein 71 [Caenorhabditis elegans] ref|NP_503692.1| Serpentine Receptor, class D (delta) family member (srd-72) [Caenorhabditis elegans] ref|NP_503665.2| Serpentine Receptor, class D (delta) family member (srd-71) [Caenorhabditis elegans] gb|AAF60584.1| Hypothetical protein Y45G12C.9 [Caenorhabditis elegans] 1.0E-169
blast CAE58046 Hypothetical protein CBG01123 [Caenorhabditis briggsae] 1.0E-126
blast CAA94133 Hypothetical protein F15A2.4 [Caenorhabditis elegans] ref|NP_510251.1| Serpentine Receptor, class D (delta) family member (srd-50) [Caenorhabditis elegans] sp|Q19474|SRD50_CAEEL Serpentine receptor class delta-50 (Protein srd-50) 3.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503665.2 7 10-32,53-75,90-112,133-155,183-205,232-254,259-281
NP_503692.1 7 10-32,53-75,90-112,133-155,183-205,232-254,259-281
C13B7.4 7 10-32,53-75,90-112,133-155,183-205,232-254,259-281
Y45G12C.9 7 10-32,53-75,90-112,133-155,183-205,232-254,259-281
Sequence
Target Sequence 
>C. ELEGANS:186732_AT
tgttgttctgattttctcattcctcggccccaccaacttcgggtacatcaaagccctggt
gacaacgttctacccgacaattgacttgcaaaactacacgctatccggcttctctgacgt
cacaaacattctttgctcaactgcgacgggaatcatcgcagctcacgcgtattttccgcc
gctggtggcgattatttggagacgaaaaatcgtccgagaaatcaatagtcaacaatcggc
tttatccgccagaactcaactgcaaactcgacattttgtgcagtgtctgacgtggcaaac
gtgtcttccgttgtttttctacgtggttccttatacattttatctcgtacagcaactttt
tggaatcggcaccgccatcaccgaatatttgatcttcccgctgaacacattctcggcggt
agttgacccgatttgcatgcttcacttcatcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTGTTCTGATTTTCTCATTCCTC 631 563 432 Antisense
GACAACGTTCTACCCGACAATTGAC 628 363 492 Antisense
GGCTTCTCTGACGTCACAAACATTC 528 537 538 Antisense
CAAACATTCTTTGCTCAACTGCGAC 674 191 554 Antisense
GAATCATCGCAGCTCACGCGTATTT 79 329 581 Antisense
TATTTTCCGCCGCTGGTGGCGATTA 155 661 601 Antisense
GCTTTATCCGCCAGAACTCAACTGC 536 303 670 Antisense
TGTCTTCCGTTGTTTTTCTACGTGG 80 555 733 Antisense
CACCGAATATTTGATCTTCCCGCTG 184 201 810 Antisense
ACACATTCTCGGCGGTAGTTGACCC 162 67 836 Antisense
GATTTGCATGCTTCACTTCATCAAG 19 429 861 Antisense
Sequence Source Affymetrix Proprietary Database