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[186730_at]

Description Y116F11B.6 /REP_DB=WormBase Gene ID /WP=CE24168 /TR=Q9NEK3 /GB=CAB81974.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 8.8
(-3)
A 		8.1
(-3)
A 		24.3
(-2)
A 		101.5
(3)
A 		93
B 17.8
(0.6)
A 		9.8
(-2.5)
A 		23.9
(3)
A 		8.5
(-3)
A 		15
C 13
(-3)
A 		56.1
(0.6)
A 		13.7
(-2.9)
A 		84.9
(3)
A 		72
avr 13.2
(-3) 		24.7
(-1.7) 		20.6
(-2.1) 		65
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 8.4
(-3)
A 		19.2
(-0)
A 		14.8
(-1.2)
A 		13.7
(-1.5)
A 		30.1
(3)
A 		23.6
(1.2)
A 		22
B 8.7
(-1.9)
A 		9.3
(-1.6)
A 		6.3
(-3)
A 		19.3
(3)
A 		8.4
(-2)
A 		6.5
(-2.9)
A 		13
C 6.7
(-2)
A 		21
(3)
A 		6.4
(-2.1)
A 		7
(-1.9)
A 		7.6
(-1.7)
A 		3.8
(-3)
A 		17
avr 7.9
(-3) 		16.5
(3) 		9.2
(-2.1) 		13.3
(0.8) 		15.4
(2.2) 		11.3
(-0.6) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.2
(-2.4)
A 		1.8
(-3)
A 		6.3
(-0.9)
A 		14.9
(3)
A 		13
B 5.7
(3)
A 		2.4
(-2.1)
A 		5.5
(2.7)
A 		1.8
(-3)
A 		4
C 4.3
(-3)
A 		16.1
(3)
A 		4.8
(-2.7)
A 		14.3
(2.1)
A 		12
avr 4.4
(-3) 		6.8
(-0.6) 		5.5
(-1.9) 		10.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.5
(-3)
A 		6.8
(1.2)
A 		3.2
(-1.7)
A 		3.5
(-1.4)
A 		9.1
(3)
A 		5.8
(0.4)
A 		8
B 3
(-0.5)
A 		3.1
(-0.3)
A 		1.5
(-3)
A 		5.1
(3)
A 		3.4
(0.2)
A 		2.4
(-1.5)
A 		4
C 2.5
(-1.6)
A 		6.4
(3)
A 		1.6
(-2.6)
A 		1.4
(-2.9)
A 		2.5
(-1.6)
A 		1.3
(-3)
A 		5
avr 2.3
(-2.6) 		5.4
(3) 		2.1
(-3) 		3.3
(-0.8) 		5
(2.3) 		3.2
(-1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186730_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13903
Sequence Type Exemplar sequence
Representative Public ID Y116F11B.6 NCBI
Target Description Y116F11B.6 /REP_DB=WormBase Gene ID /WP=CE24168 /TR=Q9NEK3 /GB=CAB81974.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075443(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075443 NCBI Caenorhabditis elegans Y116F11B.6 (Y116F11B.6) mRNA, complete cds. 11/11 None
GENEFINDER00000031772 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19839722:19843974:-1 11/11 None
Y116F11B.6 ENSEMBL cdna:known chromosome:CEL140:V:19839722:19843974:-1 gene:Y116F11B.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031762 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19839721-19843974(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116F11B.6
Entrez Gene 191018 Entrez gene
SwissProt Q9NEK3 EMBL-EBI
WormBase CE24168 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB81974 Hypothetical protein Y116F11B.6 [Caenorhabditis elegans] ref|NP_507844.1| Y116F11B.6 [Caenorhabditis elegans] 0.0
blast CAA16273 Hypothetical protein F19B2.6 [Caenorhabditis elegans] ref|NP_507885.2| F19B2.6 [Caenorhabditis elegans] 8.0E-27
blast CAI79269 Hypothetical protein Y60A3A.25 [Caenorhabditis elegans] ref|NP_001024275.1| Y60A3A.25 [Caenorhabditis elegans] 6.0E-25
Sequence
Target Sequence 
>C. ELEGANS:186730_AT
gagagaaacagaattgccgctgcaaagtctcgacgtctggaaaaagaattaatgagaaaa
acgcaagcaatttacgagacgaaaaagattacccacgaacaattgtgtgcatacaacaat
tcaaatgattcgcttttcaaaacagcggttgagtcggttttacacccctgtatcaataat
aacgagattattcgaaattatcaagaagttaacgggtgtttggaacactttgaaaatgat
aaaattcgtatcattgaggacgttgagaacattaagaagcaggatgttaaactgaaaaaa
atcgagaaaaatctgaaagaatctagaaaagagctgaaagaggcacaccaagaatatttg
aacaggaaggaactggctaaaaaaggaaacaagagggaaggaacatacatgagccattgg
tctcgtacgaagacaaaaacaaatctattggagaaaaaattcaatacgcgggtattggaa
tttgagatatggaaacaacaaagaattgctacccgcttcaaggagttctgggacgcctcc
tttagacttttatctgtcgaaaaccaagcacatgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGAAACAGAATTGCCGCTGCAA 318 395 427 Antisense
CGCTGCAAAGTCTCGACGTCTGGAA 95 255 444 Antisense
AAACGCAAGCAATTTACGAGACGAA 659 125 485 Antisense
GATTACCCACGAACAATTGTGTGCA 104 431 513 Antisense
GATTCGCTTTTCAAAACAGCGGTTG 505 433 553 Antisense
GGTTTTACACCCCTGTATCAATAAT 180 507 582 Antisense
TACATGAGCCATTGGTCTCGTACGA 569 641 832 Antisense
AACAAAGAATTGCTACCCGCTTCAA 663 129 923 Antisense
GCTTCAAGGAGTTCTGGGACGCCTC 252 303 941 Antisense
ACGCCTCCTTTAGACTTTTATCTGT 543 89 959 Antisense
ATCTGTCGAAAACCAAGCACATGCA 419 33 978 Antisense
Sequence Source Affymetrix Proprietary Database