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[186729_s_at]

Description ZK673.6 /REP_DB=WormBase Gene ID /WP=CE01718 /TR=SW:Q09378 /GB=CAA88481.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 10.7
(-1.9)
A 		14.4
(-1.4)
A 		3
(-3)
A 		46.8
(3)
A 		44
B 9.9
(0.7)
A 		6.4
(-1.2)
A 		14
(3)
A 		3.2
(-3)
A 		11
C 4.8
(-2.8)
A 		31.3
(-1.3)
A 		1.6
(-3)
A 		103.9
(3)
A 		102
avr 8.5
(-2.7) 		17.4
(-1.5) 		6.2
(-3) 		51.3
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 21.3
(-2.4)
A 		15.1
(-3)
A 		23.2
(-2.3)
A 		44.8
(-0.3)
A 		42.2
(-0.5)
A 		80.3
(3)
P 		65
B 15.2
(-1.6)
A 		6.7
(-3)
A 		22.4
(-0.4)
A 		9
(-2.6)
A 		43
(3)
A 		30.5
(0.9)
A 		36
C 4.1
(-2.8)
A 		12.5
(-1.4)
A 		3
(-3)
A 		10.4
(-1.7)
A 		20.7
(0.1)
A 		37.6
(3)
A 		35
avr 13.5
(-2.7) 		11.4
(-3) 		16.2
(-2.2) 		21.4
(-1.4) 		35.3
(0.8) 		49.5
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 3.9
(0.1)
A 		3.1
(-0.7)
A 		0.8
(-3)
A 		6.8
(3)
A 		6
B 3.1
(2.8)
A 		1.6
(-0.8)
A 		3.2
(3)
A 		0.7
(-3)
A 		3
C 1.6
(-2.6)
A 		9
(-0)
A 		0.6
(-3)
A 		17.5
(3)
A 		17
avr 2.9
(-1.8) 		4.6
(-0.3) 		1.5
(-3) 		8.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 3.9
(-3)
A 		5.4
(-2.4)
A 		5.1
(-2.5)
A 		11.4
(-0.1)
A 		12.7
(0.4)
A 		19.5
(3)
P 		16
B 5.3
(-1.8)
A 		2.2
(-3)
A 		5.4
(-1.7)
A 		2.4
(-2.9)
A 		17.5
(3)
A 		11.4
(0.6)
A 		15
C 1.5
(-2.6)
A 		3.8
(-1.5)
A 		0.8
(-3)
A 		2.1
(-2.3)
A 		6.7
(0)
A 		12.6
(3)
A 		12
avr 3.6
(-3) 		3.8
(-2.9) 		3.8
(-2.9) 		5.3
(-2.1) 		12.3
(1.8) 		14.5
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186729_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3570
Sequence Type Exemplar sequence
Representative Public ID ZK673.6 NCBI
Target Description ZK673.6 /REP_DB=WormBase Gene ID /WP=CE01718 /TR=SW:Q09378 /GB=CAA88481.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063848(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063848 NCBI Caenorhabditis elegans ZK673.6 (ZK673.6) mRNA, complete cds. 11/11 None
SNAP00000007630 ENSEMBL cdna:SNAP chromosome:CEL140:II:10462853:10464229:-1 11/11 None
GENEFINDER00000007639 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10462853:10464229:-1 11/11 None
ZK673.6 ENSEMBL cdna:known chromosome:CEL140:II:10462853:10464229:-1 gene:ZK673.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10462849-10464226(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK673.6
Entrez Gene 174611 Entrez gene
SwissProt Q09378 EMBL-EBI
WormBase CE01718 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88481 Hypothetical protein ZK673.6 [Caenorhabditis elegans] ref|NP_496249.1| ZK673.6 [Caenorhabditis elegans] sp|Q09378|YS56_CAEEL Hypothetical protein ZK673.6 in chromosome II 1.0E-165
blast CAA88481 Hypothetical protein ZK673.6 [Caenorhabditis elegans] ref|NP_496249.1| ZK673.6 [Caenorhabditis elegans] sp|Q09378|YS56_CAEEL Hypothetical protein ZK673.6 in chromosome II 1.0E-156
blast CAE67757 Hypothetical protein CBG13332 [Caenorhabditis briggsae] 3.0E-64
blast CAE67757 Hypothetical protein CBG13332 [Caenorhabditis briggsae] 3.0E-59
Sequence
Target Sequence 
>C. ELEGANS:186729_S_AT
ggaggttcccaacagcggttggagatacatgccggcatacttgaagaaggtcgagttcat
caagaagaacgaggcggaagccaatatgattgcggaattgtgtgaaaaaatgggccacaa
ggaggagcaacatttctatgatatcaaaaatgtggaccatgactcaaacatctacacaac
gacagtattttattgtgataagatcaagaagatgtacagtgatgtggagaaaactgtgaa
gacgtgcaatcgtagaagaaagaaagtggaaaagacacagattcttccagaccttcgaga
tcaatgcacaaaataccataaggcagtgcatacattagatgaacagtgccgtgaattgga
caatctgaaggagtacgtccgagctggtcgacattttcataatcgccacttcaaacaggg
tcttgtggttattagcgccctgacagccgttagaagtggcgttataaaggaatggatgac
gcgagacagcaagagacagcaaaaaaagggcaagacgacgactgttgccagaagcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGTTCCCAACAGCGGTTGGAGA 491 485 276 Antisense
GGTTGGAGATACATGCCGGCATACT 624 507 292 Antisense
GGGCCACAAGGAGGAGCAACATTTC 56 493 387 Antisense
GGACCATGACTCAAACATCTACACA 466 523 429 Antisense
ATTCTTCCAGACCTTCGAGATCAAT 346 11 556 Antisense
TACGTCCGAGCTGGTCGACATTTTC 190 649 649 Antisense
GACATTTTCATAATCGCCACTTCAA 295 371 665 Antisense
ATCGCCACTTCAAACAGGGTCTTGT 286 37 677 Antisense
GTCTTGTGGTTATTAGCGCCCTGAC 28 469 695 Antisense
CGCCCTGACAGCCGTTAGAAGTGGC 532 255 711 Antisense
GACGACGACTGTTGCCAGAAGCACT 572 379 789 Antisense
Sequence Source Affymetrix Proprietary Database