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[186728_s_at]

Description F19B10.10 /REP_DB=WormBase Gene ID /WP=CE09477 /TR=O02075 /GB=AAB52930.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 60      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 30.9
(-0.8)
A 		7.8
(-3)
A 		67.8
(2.8)
A 		70.2
(3)
A 		62
B 41.7
(1.4)
A 		49
(3)
A 		45.8
(2.3)
A 		21.5
(-3)
A 		28
C 61.8
(3)
A 		57.3
(2.5)
A 		49.1
(1.7)
A 		5.2
(-3)
A 		57
avr 44.8
(0.4) 		38
(-1.4) 		54.2
(3) 		32.3
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 37.8
(-3)
A 		39.9
(-2.8)
A 		45.9
(-2.3)
A 		47.5
(-2.2)
A 		97.9
(2.2)
A 		107.6
(3)
P 		70
B 76.6
(-0.2)
A 		42
(-1.6)
A 		8.3
(-3)
A 		62.5
(-0.8)
A 		104.5
(1)
A 		153.6
(3)
P 		145
C 40.8
(-2)
A 		38.3
(-2.1)
A 		27.1
(-2.6)
A 		18.8
(-3)
A 		93.5
(0.5)
A 		148.3
(3)
M 		130
avr 51.7
(-1.7) 		40.1
(-2.3) 		27.1
(-3) 		42.9
(-2.1) 		98.6
(0.9) 		136.5
(3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 11.2
(0.6)
A 		1.7
(-3)
A 		17.7
(3)
A 		10.3
(0.2)
A 		16
B 13.3
(3)
A 		12.1
(2.2)
A 		10.6
(1.1)
A 		4.6
(-3)
A 		9
C 20.5
(3)
A 		16.5
(1.8)
A 		17.1
(2)
A 		0.9
(-3)
A 		20
avr 15
(2.9) 		10.1
(-0.1) 		15.1
(3) 		5.3
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 7
(-3)
A 		14.2
(-1.1)
A 		10
(-2.2)
A 		12.1
(-1.6)
A 		29.6
(3)
A 		26.2
(2.1)
P 		23
B 26.7
(-0.3)
A 		14
(-1.7)
A 		2
(-3)
A 		16.6
(-1.4)
A 		42.5
(1.4)
A 		57.3
(3)
P 		55
C 15.1
(-1.5)
A 		11.7
(-2)
A 		6.9
(-2.6)
A 		3.8
(-3)
A 		30.2
(0.5)
A 		49.7
(3)
M 		46
avr 16.3
(-1.4) 		13.3
(-1.9) 		6.3
(-3) 		10.8
(-2.3) 		34.1
(1.4) 		44.4
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186728_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5197
Sequence Type Exemplar sequence
Representative Public ID F19B10.10 NCBI
Target Description F19B10.10 /REP_DB=WormBase Gene ID /WP=CE09477 /TR=O02075 /GB=AAB52930.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062212(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062212 NCBI Caenorhabditis elegans F19B10.10 (F19B10.10) mRNA, complete cds. 11/11 None
SNAP00000017123 ENSEMBL cdna:SNAP chromosome:CEL140:II:3677602:3678843:-1 11/11 None
GENEFINDER00000017136 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3677602:3681487:-1 11/11 None
F19B10.10.1 ENSEMBL cdna:known chromosome:CEL140:II:3677541:3681409:-1 gene:F19B10.10 11/11 None
F19B10.10.2 ENSEMBL cdna:known chromosome:CEL140:II:3677548:3680433:-1 gene:F19B10.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3677600-3680423(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19B10.10
Entrez Gene 173712 Entrez gene
SwissProt O02075 EMBL-EBI
WormBase CE09477 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52930 Hypothetical protein F19B10.10 [Caenorhabditis elegans] ref|NP_494613.1| F19B10.10 [Caenorhabditis elegans] 0.0
blast AAB65921 Hypothetical protein K12B6.8 [Caenorhabditis elegans] ref|NP_504611.1| K12B6.8 [Caenorhabditis elegans] 1.0E-159
blast AAB65921 Hypothetical protein K12B6.8 [Caenorhabditis elegans] ref|NP_504611.1| K12B6.8 [Caenorhabditis elegans] 2.0E-72
Sequence
Target Sequence 
>C. ELEGANS:186728_S_AT
tctaaaactatccgagacgtcccgccgaaaggcttcacagttggagatgtacattcggag
ctcaagtacctaggcttgctggaattcttcccgaacatcagcaattacgcagagattgcc
tataaaaaggtcgtggcagagaagaaaatgaagatcctgagaacctgtgatatgtttgac
gcagtggagatttgcatgatgcttgcggtgttcaatgggtatccaaagcttgcccaattc
ctccactctcaacacgcgtgccaccgaatccaggggcttcaatgcaagaagtgtgagctc
gagaagaagcatccaatgatgaatagctggctttatccgtacatggaagtagaagaagat
gaaaaggttgactctacgagctcggatgacgaggagaagcgcacgtctacaagcgaattg
gctggaaatggaagaaaaagtgagcagaagaagcttgcagtgaaagatccagagccatca
actatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTAAAACTATCCGAGACGTCCCGC 552 599 1312 Antisense
CCCGCCGAAAGGCTTCACAGTTGGA 624 259 1332 Antisense
GGAGCTCAAGTACCTAGGCTTGCTG 245 521 1368 Antisense
TGGAATTCTTCCCGAACATCAGCAA 263 547 1391 Antisense
GCATGATGCTTGCGGTGTTCAATGG 670 309 1505 Antisense
GGGTATCCAAAGCTTGCCCAATTCC 316 497 1528 Antisense
TGCCACCGAATCCAGGGGCTTCAAT 69 583 1570 Antisense
TAGCTGGCTTTATCCGTACATGGAA 498 651 1635 Antisense
GGTTGACTCTACGAGCTCGGATGAC 626 507 1677 Antisense
CGAGGAGAAGCGCACGTCTACAAGC 20 251 1701 Antisense
GAAAGATCCAGAGCCATCAACTATG 260 361 1773 Antisense
Sequence Source Affymetrix Proprietary Database