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[186727_at] 7TM chemoreceptor, srj family

Description T28A11.12 /REP_DB=WormBase Gene ID /WP=CE26011 /TR=P91504 /GB=AAC48122.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 19      6grp_cgc > 77      6grp_cgc_sub > 04_05_06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 16.7
(-3)
A 		40.3
(-1.6)
A 		22.3
(-2.7)
A 		117.4
(3)
P 		101
B 30.9
(-1.1)
A 		67.8
(1.6)
M 		4.8
(-3)
A 		86.5
(3)
P 		82
C 41.9
(-1.7)
P 		35.8
(-2)
P 		13.2
(-3)
A 		146.5
(3)
P 		133
avr 29.8
(-2) 		48
(-1) 		13.4
(-3) 		116.8
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 9.8
(-2.1)
A 		11.9
(-1.7)
A 		34.1
(3)
M 		5.6
(-3)
A 		33.9
(3)
A 		32.9
(2.7)
A 		29
B 23.7
(-2)
A 		39.3
(0.7)
A 		18
(-3)
A 		53
(3)
A 		28.3
(-1.2)
A 		26.9
(-1.5)
A 		35
C 22.9
(-1.3)
A 		13.6
(-3)
A 		28.1
(-0.3)
A 		46.1
(3)
A 		29
(-0.2)
A 		35.7
(1.1)
A 		33
avr 18.8
(-3) 		21.6
(-2) 		26.7
(-0.1) 		34.9
(3) 		30.4
(1.3) 		31.8
(1.8) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 6.1
(-2.8)
A 		8.7
(-1.5)
A 		5.8
(-3)
A 		17.2
(3)
P 		11
B 9.9
(0.1)
A 		16.7
(2.4)
M 		1.1
(-3)
A 		18.4
(3)
P 		17
C 13.9
(-0.2)
P 		10.3
(-1.3)
P 		4.6
(-3)
A 		24.7
(3)
P 		20
avr 10
(-0.7) 		11.9
(-0) 		3.8
(-3) 		20.1
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.8
(-2.7)
A 		4.2
(-1.1)
A 		7.4
(1.1)
M 		1.4
(-3)
A 		10.2
(3)
A 		8
(1.5)
A 		9
B 8.2
(-0.6)
A 		13.1
(2.4)
A 		4.4
(-3)
A 		14
(3)
A 		11.5
(1.4)
A 		10
(0.5)
A 		10
C 8.5
(0.3)
A 		4.1
(-3)
A 		7.1
(-0.7)
A 		9.3
(0.9)
A 		9.4
(1)
A 		12
(3)
A 		8
avr 6.2
(-3) 		7.1
(-1.7) 		6.3
(-2.9) 		8.2
(-0.1) 		10.4
(3) 		10
(2.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186727_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15819
Sequence Type Exemplar sequence
Representative Public ID T28A11.12 NCBI
Target Description T28A11.12 /REP_DB=WormBase Gene ID /WP=CE26011 /TR=P91504 /GB=AAC48122.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071487(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071487 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-11) (srj-11) mRNA, complete cds. 11/11 None
SNAP00000028199 ENSEMBL cdna:SNAP chromosome:CEL140:V:3241251:3242463:1 11/11 None
GENEFINDER00000028226 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3241251:3242463:1 11/11 None
T28A11.12 ENSEMBL cdna:known chromosome:CEL140:V:3241251:3242463:1 gene:T28A11.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3241250-3242463(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srj family
Gene Symbol srj-11
Ensembl T28A11.12
Entrez Gene 189018 Entrez gene
SwissProt P91504 EMBL-EBI
WormBase CE26011 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503888 Serpentine Receptor, class J family member (srj-11) [Caenorhabditis elegans] gb|AAC48122.2| Serpentine receptor, class j protein 11 [Caenorhabditis elegans] 0.0
blast NP_503888 Serpentine Receptor, class J family member (srj-11) [Caenorhabditis elegans] gb|AAC48122.2| Serpentine receptor, class j protein 11 [Caenorhabditis elegans] 1.0E-179
blast CAE74633 Hypothetical protein CBG22428 [Caenorhabditis briggsae] 1.0E-162
blast CAE74633 Hypothetical protein CBG22428 [Caenorhabditis briggsae] 1.0E-151
blast AAD14739 Serpentine receptor, class j protein 15 [Caenorhabditis elegans] ref|NP_503539.1| Serpentine Receptor, class J family member (srj-15) [Caenorhabditis elegans] 1.0E-121
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.9E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503888.1 7 13-30,43-65,91-113,126-148,197-219,246-268,283-305
T28A11.12 7 13-30,43-65,91-113,126-148,197-219,246-268,283-305
SNAP00000028199 7 13-30,43-65,91-113,126-148,197-219,246-268,283-305
GENEFINDER00000028226 7 13-30,43-65,91-113,126-148,184-206,232-254,269-291
Sequence
Target Sequence 
>C. ELEGANS:186727_AT
ggctatttggtctctttgtattttttgtttttcacggaatagcttggagttctgtctgcg
agatgtgtctctatggagatcaagaagtgttcgactacatctatgacgcttttcaaaaag
attaccatgtggattcacatgatttatccatgctaatggcattgtttttcgatgcaagtc
ccgagatcaaaagaagaagctggattggaattctgctgctgactggaatttcgatatatg
caatttctctatacgttattcttggatggaagattatgaaaaagctggcggataatccag
gggtttctgcaacgactcagaaattgcatagacagttattcaaagcccttgcagttcaga
ctttcatcccgatctgcatcagcttctccccttgcatgatggcctggtacggtcctgtaa
tcggattggatctcggaatgtggaacaattatttgggcgtcattgcactgtcagcgttcc
ctgttctagatccacttgctatcattttcctcctacccaactaccggaacaagctttttc
gcactgtgaaaatgccaatcaaatacttttattctggaacatcgactgtccgacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTATTTGGTCTCTTTGTATTTTT 357 535 404 Antisense
AATAGCTTGGAGTTCTGTCTGCGAG 124 173 441 Antisense
GTTCGACTACATCTATGACGCTTTT 57 443 492 Antisense
GATTGGAATTCTGCTGCTGACTGGA 543 435 606 Antisense
AATCCAGGGGTTTCTGCAACGACTC 620 167 697 Antisense
AAAGCCCTTGCAGTTCAGACTTTCA 183 125 745 Antisense
GCCTGGTACGGTCCTGTAATCGGAT 504 283 805 Antisense
TATTTGGGCGTCATTGCACTGTCAG 490 661 853 Antisense
TAGATCCACTTGCTATCATTTTCCT 505 653 890 Antisense
ACCGGAACAAGCTTTTTCGCACTGT 195 89 926 Antisense
ATTCTGGAACATCGACTGTCCGACC 411 9 974 Antisense
Sequence Source Affymetrix Proprietary Database