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[186726_at]

Description Y38E10A.13 /REP_DB=WormBase Gene ID /WP=CE21593 /TR=Q9NAJ8 /GB=CAB54404.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 16      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 3.9
(-3)
A 		15.8
(-2.5)
A 		52.3
(-1.1)
A 		153.7
(3)
P 		150
B 16
(-3)
A 		46.1
(-1.8)
A 		57.9
(-1.4)
A 		171.9
(3)
P 		156
C 5.4
(-3)
A 		38
(-1.7)
A 		54.7
(-1)
A 		155.1
(3)
P 		150
avr 8.4
(-3) 		33.3
(-2) 		55
(-1.2) 		160.2
(3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 437
1 2 3 4 5 6 range
A 406.7
(3)
P 		62.4
(-2.1)
A 		17.8
(-2.8)
A 		2
(-3)
A 		3.9
(-3)
A 		30.4
(-2.6)
A 		405
B 406.1
(3)
P 		76.9
(-1.9)
M 		3.1
(-3)
A 		22
(-2.7)
A 		12.8
(-2.9)
A 		69.6
(-2)
P 		403
C 438.6
(3)
P 		59.9
(-2.2)
A 		13.8
(-2.8)
A 		2
(-3)
A 		4.8
(-3)
A 		53.5
(-2.3)
A 		437
avr 417.1
(3) 		66.4
(-2.1) 		11.6
(-2.9) 		8.7
(-3) 		7.2
(-3) 		51.2
(-2.4) 		410
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 1.4
(-3)
A 		3.4
(-2.4)
A 		13.7
(0.5)
A 		22.5
(3)
P 		21
B 5.1
(-3)
A 		11.4
(-1.8)
A 		13.4
(-1.4)
A 		36.6
(3)
P 		32
C 1.8
(-3)
A 		10.9
(-0.8)
A 		19.1
(1.3)
A 		26.1
(3)
P 		24
avr 2.8
(-3) 		8.6
(-1.6) 		15.4
(-0) 		28.4
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 75
(3)
P 		22.2
(-1.3)
A 		3.9
(-2.7)
A 		0.5
(-3)
A 		1.2
(-2.9)
A 		7.4
(-2.4)
A 		75
B 141.3
(3)
P 		25.6
(-1.9)
M 		0.7
(-3)
A 		5.8
(-2.8)
A 		5.2
(-2.8)
A 		26
(-1.9)
P 		141
C 162.6
(3)
P 		18.3
(-2.3)
A 		3.5
(-2.9)
A 		0.4
(-3)
A 		1.6
(-3)
A 		17.9
(-2.4)
A 		162
avr 126.3
(3) 		22
(-2) 		2.7
(-3) 		2.2
(-3) 		2.7
(-3) 		17.1
(-2.3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186726_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3950
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.13 NCBI
Target Description Y38E10A.13 /REP_DB=WormBase Gene ID /WP=CE21593 /TR=Q9NAJ8 /GB=CAB54404.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064295(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064295 NCBI Caenorhabditis elegans Y38E10A.13 (Y38E10A.13) mRNA, complete cds. 11/11 None
SNAP00000017439 ENSEMBL cdna:SNAP chromosome:CEL140:II:12620549:12620764:-1 11/11 None
GENEFINDER00000017466 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12620549:12620764:-1 11/11 None
Y38E10A.13 ENSEMBL cdna:known chromosome:CEL140:II:12620549:12620764:-1 gene:Y38E10A.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027255 1/11 Cross Hyb Matching Probes None
SNAP00000017438 1/11 Cross Hyb Matching Probes None
Y38E10A.26 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12620545-12620761(-) 100.0 100.0
chrII:12619069-12619285(-) 94.44 94.44
Public Domain and Genome References
Gene Title
Ensembl Y38E10A.13
Entrez Gene 189660 Entrez gene
SwissProt Q9NAJ8 EMBL-EBI
WormBase CE21593 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54404 Hypothetical protein Y38E10A.13 [Caenorhabditis elegans] ref|NP_496696.1| Y38E10A.13 [Caenorhabditis elegans] 2.0E-34
blast CAE17994 Hypothetical protein Y38E10A.26 [Caenorhabditis elegans] ref|NP_001022426.1| Y38E10A.26 [Caenorhabditis elegans] 3.0E-33
blast CAB54403 Hypothetical protein Y38E10A.12 [Caenorhabditis elegans] ref|NP_496695.1| Y38E10A.12 [Caenorhabditis elegans] 9.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR009853 EMBL-EBI Protein of unknown function DUF1412 1.1E-50
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496696.1 1 5-23
Y38E10A.13 1 5-23
SNAP00000017439 1 5-23
GENEFINDER00000017466 1 5-23
Sequence
Target Sequence 
>C. ELEGANS:186726_AT
agcggcgacaagcttactacaccggtggcggagttgtgaacaacatggtcagcgatggtt
tgttcggaggatcaacttctcttggttgggcccaagttccacacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGGCGACAAGCTTACTACACCGG 132 57 86 Antisense
AAGCTTACTACACCGGTGGCGGAGT 88 63 95 Antisense
TACTACACCGGTGGCGGAGTTGTGA 615 643 100 Antisense
ACCGGTGGCGGAGTTGTGAACAACA 124 87 106 Antisense
GTTGTGAACAACATGGTCAGCGATG 441 437 118 Antisense
TGGTCAGCGATGGTTTGTTCGGAGG 57 551 131 Antisense
GCGATGGTTTGTTCGGAGGATCAAC 34 291 137 Antisense
GTTCGGAGGATCAACTTCTCTTGGT 231 443 147 Antisense
GGATCAACTTCTCTTGGTTGGGCCC 525 509 154 Antisense
CAACTTCTCTTGGTTGGGCCCAAGT 392 185 158 Antisense
CTTGGTTGGGCCCAAGTTCCACACG 114 213 166 Antisense
Sequence Source Affymetrix Proprietary Database