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[186724_at]

Description Y37E11B.9 /REP_DB=WormBase Gene ID /WP=CE19618 /TR=Q9TYM9 /GB=AAD12827.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 132.8
(2.4)
A 		27.7
(-2.7)
A 		144.9
(3)
A 		20.6
(-3)
A 		124
B 107.8
(2.5)
A 		24.9
(-3)
A 		26
(-2.9)
A 		115.8
(3)
A 		91
C 15.9
(-3)
A 		34.2
(-1)
A 		70.4
(3)
A 		15.9
(-3)
A 		55
avr 85.5
(3) 		28.9
(-3) 		80.4
(2.5) 		50.8
(-0.7) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 134.3
(2.8)
A 		16
(-3)
A 		71.6
(-0.3)
A 		138.8
(3)
A 		131.6
(2.6)
A 		23.1
(-2.7)
A 		123
B 44.4
(-1.6)
A 		134.7
(3)
A 		21.9
(-2.8)
A 		17.6
(-3)
A 		22.9
(-2.7)
A 		18.7
(-2.9)
A 		117
C 61.8
(-1.2)
A 		41.8
(-3)
A 		75.3
(0.1)
A 		49.8
(-2.3)
A 		75.4
(0.1)
A 		106.8
(3)
A 		65
avr 80.2
(3) 		64.2
(-0.1) 		56.3
(-1.7) 		68.7
(0.8) 		76.6
(2.3) 		49.5
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 48.4
(3)
A 		6
(-2.6)
A 		37.9
(1.6)
A 		3
(-3)
A 		45
B 34.4
(3)
A 		6.1
(-3)
A 		6
(-3)
A 		24.7
(1)
A 		28
C 5.3
(-2.3)
A 		9.8
(-1)
A 		24.5
(3)
A 		2.7
(-3)
A 		22
avr 29.4
(3) 		7.3
(-3) 		22.8
(1.2) 		10.1
(-2.2) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 24.8
(0.4)
A 		5.7
(-3)
A 		15.6
(-1.2)
A 		35.2
(2.2)
A 		39.7
(3)
A 		5.6
(-3)
A 		34
B 15.5
(-1.4)
A 		44.8
(3)
A 		5.3
(-2.9)
A 		4.7
(-3)
A 		9.3
(-2.3)
A 		7
(-2.7)
A 		40
C 22.9
(0)
A 		12.7
(-2.4)
A 		19.2
(-0.9)
A 		10
(-3)
A 		24.4
(0.4)
A 		35.7
(3)
A 		26
avr 21.1
(1.2) 		21.1
(1.2) 		13.4
(-3) 		16.6
(-1.3) 		24.5
(3) 		16.1
(-1.5) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186724_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10779
Sequence Type Exemplar sequence
Representative Public ID Y37E11B.9 NCBI
Target Description Y37E11B.9 /REP_DB=WormBase Gene ID /WP=CE19618 /TR=Q9TYM9 /GB=AAD12827.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067981(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067981 NCBI Caenorhabditis elegans Y37E11B.9 (Y37E11B.9) mRNA, complete cds. 10/11 None
Y37E11B.9 ENSEMBL cdna:known chromosome:CEL140:IV:3601759:3603373:-1 gene:Y37E11B.9 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026348 3/11 Cross Hyb Matching Probes None
GENEFINDER00000026355 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3601737-3603402(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E11B.9
Entrez Gene 189626 Entrez gene
SwissProt Q9TYM9 EMBL-EBI
WormBase CE34610 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12827 Hypothetical protein Y37E11B.9 [Caenorhabditis elegans] ref|NP_500382.2| Y37E11B.9 [Caenorhabditis elegans] 1.0E-89
blast AAD12819 Hypothetical protein Y37E11B.10a [Caenorhabditis elegans] ref|NP_001023442.1| Y37E11B.10a [Caenorhabditis elegans] 3.0E-11
blast AAP13764 Hypothetical protein Y37E11B.10c [Caenorhabditis elegans] ref|NP_001023444.1| Y37E11B.10c [Caenorhabditis elegans] 9.0E-9
Sequence
Target Sequence 
>C. ELEGANS:186724_AT
gctccggctccgactttgaaaaaatccgagacaccgccggcttttggactctctggagtt
gtgaagaaggtgcctagtgtctatttcccaattttcaataagcttcctcccaagcctccg
ggaaacagaagaggcaccggcagtatgaattccgtggctccgccgactcagaaaatcaat
gcacctcacattgtctacgatgttgctcagctttctccggctcaacgacgcatgccaccg
ccggctccgattgctgcagaaacgacaaaggccaataaagcagctttggctccggctcca
gttccagctccgcttccagatgcagctcctcaaagcgcagacaaaaagttcccgggtacc
ggacaacgcctcggcagtgcagctccccaggtcatcaacataactgcagctgctccgact
gccccgactgctccaactggcaacaagatcgttatcgttggcaccacgcctgatgggaag
acaacgatccaaatgacgctcgactttaagatggtcaaagggtcgcaacaggtcaccctg
gtgcccaagaaggttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCGGCTCCGACTTTGAAAAAAT 683 297 211 Antisense
GAAAAAATCCGAGACACCGCCGGCT 497 353 228 Antisense
AGAAGGTGCCTAGTGTCTATTTCCC 488 75 275 Antisense
CAATTTTCAATAAGCTTCCTCCCAA 53 181 299 Antisense
AATGCACCTCACATTGTCTACGATG 525 163 388 Antisense
CGGCTCCGATTGCTGCAGAAACGAC 511 241 452 Antisense
TGCAGCTCCTCAAAGCGCAGACAAA 215 577 531 Antisense
TCAACATAACTGCAGCTGCTCCGAC 226 631 605 Antisense
GACTGCTCCAACTGGCAACAAGATC 215 375 636 Antisense
ACAAGATCGTTATCGTTGGCACCAC 269 113 653 Antisense
TCACCCTGGTGCCCAAGAAGGTTGT 317 625 743 Antisense
Sequence Source Affymetrix Proprietary Database