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[186723_at]

Description Y105C5A.16 /REP_DB=WormBase Gene ID /WP=CE24054 /TR=Q9U322 /GB=CAB60303.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 80      6grp_total > 06      4grp_total > 37      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 325.8
(3)
P 		234.8
(-0.3)
P 		160.9
(-3)
P 		299.2
(2)
P 		165
B 208.4
(3)
P 		203.3
(2.7)
P 		87.9
(-3)
P 		133.5
(-0.7)
P 		121
C 256.8
(3)
P 		192.2
(-0.5)
P 		145.5
(-3)
P 		175.3
(-1.4)
P 		111
avr 263.7
(3) 		210.1
(0.6) 		131.4
(-3) 		202.7
(0.2) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 307.9
(3)
P 		211.5
(-0.1)
P 		131.6
(-2.7)
P 		168.2
(-1.5)
P 		123.6
(-3)
P 		134.5
(-2.6)
P 		184
B 282.2
(3)
P 		243.8
(1.5)
P 		153
(-2)
P 		143.5
(-2.3)
P 		125.7
(-3)
P 		146.9
(-2.2)
P 		157
C 378.4
(3)
P 		224
(-0.9)
P 		190.8
(-1.7)
P 		148.8
(-2.7)
P 		137.9
(-3)
P 		140.8
(-2.9)
P 		241
avr 322.8
(3) 		226.4
(0) 		158.5
(-2.1) 		153.5
(-2.2) 		129.1
(-3) 		140.7
(-2.6) 		194
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 118.6
(3)
P 		51
(-2.3)
P 		42.1
(-3)
P 		43.8
(-2.9)
P 		77
B 66.4
(3)
P 		50.2
(0.9)
P 		20.4
(-3)
P 		28.4
(-2)
P 		46
C 85
(3)
P 		55.3
(-0.2)
P 		50.7
(-0.7)
P 		29.6
(-3)
P 		55
avr 90
(3) 		52.2
(-1) 		37.7
(-2.6) 		33.9
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 56.8
(0.6)
P 		75.2
(3)
P 		28.6
(-3)
P 		42.7
(-1.2)
P 		37.3
(-1.9)
P 		32.8
(-2.5)
P 		47
B 98.2
(3)
P 		81.2
(1.3)
P 		37.2
(-3)
P 		38
(-2.9)
P 		51.1
(-1.6)
P 		54.8
(-1.3)
P 		61
C 140.3
(3)
P 		68.3
(-0.9)
P 		48.6
(-2)
P 		29.9
(-3)
P 		44.6
(-2.2)
P 		47.1
(-2.1)
P 		110
avr 98.4
(3) 		74.9
(0.7) 		38.1
(-2.9) 		36.9
(-3) 		44.3
(-2.3) 		44.9
(-2.2) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186723_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10240
Sequence Type Exemplar sequence
Representative Public ID Y105C5A.16 NCBI
Target Description Y105C5A.16 /REP_DB=WormBase Gene ID /WP=CE24054 /TR=Q9U322 /GB=CAB60303.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070482(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070482 NCBI Caenorhabditis elegans Y105C5A.15 (Y105C5A.15) mRNA, complete cds. 11/11 None
SNAP00000033715 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15717764:15721767:1 11/11 None
GENEFINDER00000033777 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15716982:15728875:1 11/11 None
Y105C5A.15 ENSEMBL cdna:known chromosome:CEL140:IV:15710938:15722229:1 gene:Y105C5A.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15716987-15721773(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5A.15
Entrez Gene 178442 Entrez gene
SwissProt Q9U323 EMBL-EBI
WormBase CE35192 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60302 Hypothetical protein Y105C5A.15 [Caenorhabditis elegans] ref|NP_502883.2| Y105C5A.15 [Caenorhabditis elegans] 0.0
blast T31575 hypothetical protein Y105C5A.r - Caenorhabditis elegans 0.0
blast CAE68072 Hypothetical protein CBG13701 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:186723_AT
gttggatccaactcacatgcgagatctggaagttttcattctaccattccgagaaaccat
cgaatctttgacatcagagcatccaaatttccataaaatccttccggaatggcttgctct
tcaacatgaatgtcaagtgcagaatgatgagccaactgctttgctccgagagctcaaaca
gattgccacaaaagttttggagtctgagaaggagaagatcatgacagatgagcatagaat
tgcggcgatccttaacccacggaaccccaaagagcccctgagcagaggaagttcatgtga
tggagagccacatcggaagagaagaatgttcttgtcatcgttggaagatgatcaggtcac
tgatgagttggagtgctatttgaggtcacaataccctccgaatcagacaaaagacgtcat
cactttctggagcacaactggccacgcccagttcccaactttaagctcactggctcgccg
aaccctctgtaccccagcaattgctccaaaaactcaattcgatgctcggtgtgcatcagt
gagccccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGATCCAACTCACATGCGAGAT 280 437 1272 Antisense
AAGTTTTCATTCTACCATTCCGAGA 684 155 1301 Antisense
GGAATGGCTTGCTCTTCAACATGAA 53 533 1377 Antisense
TGATGAGCCAACTGCTTTGCTCCGA 357 565 1416 Antisense
TAGAATTGCGGCGATCCTTAACCCA 216 653 1506 Antisense
CCCCAAAGAGCCCCTGAGCAGAGGA 563 261 1536 Antisense
GTCACAATACCCTCCGAATCAGACA 648 461 1656 Antisense
GTCATCACTTTCTGGAGCACAACTG 596 467 1687 Antisense
GTTCCCAACTTTAAGCTCACTGGCT 476 441 1722 Antisense
AACTCAATTCGATGCTCGGTGTGCA 202 141 1782 Antisense
TCGGTGTGCATCAGTGAGCCCCGAT 183 607 1797 Antisense
Sequence Source Affymetrix Proprietary Database