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[186722_at]

Description F19B10.11 /REP_DB=WormBase Gene ID /WP=CE09478 /TR=O02066 /GB=AAB52922.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 11      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 9.4
(-2.5)
A 		4.8
(-3)
A 		15
(-2)
A 		64.2
(3)
A 		59
B 44.2
(1.3)
A 		13.2
(-2)
A 		4.4
(-3)
A 		59.9
(3)
A 		56
C 8.8
(-3)
A 		42.9
(-0.4)
A 		9.6
(-2.9)
A 		88.1
(3)
A 		79
avr 20.8
(-1.9) 		20.3
(-2) 		9.7
(-3) 		70.7
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 13.9
(-1.9)
A 		11.8
(-2.2)
A 		20.4
(-0.7)
A 		7.7
(-3)
A 		40.3
(3)
A 		25.6
(0.3)
A 		33
B 10.1
(-2.4)
A 		16.8
(-1.6)
A 		7.2
(-2.8)
A 		10
(-2.4)
A 		54.3
(3)
A 		5.3
(-3)
A 		49
C 7.8
(-2.2)
A 		29.1
(3)
A 		11.2
(-1.4)
A 		10.2
(-1.6)
A 		8.7
(-2)
A 		4.7
(-3)
A 		24
avr 10.6
(-2.7) 		19.2
(-0.6) 		12.9
(-2.1) 		9.3
(-3) 		34.4
(3) 		11.9
(-2.4) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.4
(-1.3)
A 		1
(-3)
A 		3.9
(-0.9)
A 		9.4
(3)
A 		8
B 14.1
(3)
A 		3.3
(-1.9)
A 		1
(-3)
A 		12.8
(2.4)
A 		13
C 2.9
(-3)
A 		12.3
(1.7)
A 		3.4
(-2.8)
A 		14.9
(3)
A 		12
avr 6.8
(-0.5) 		5.5
(-1.3) 		2.8
(-3) 		12.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.6
(-2.6)
A 		4.2
(-1.7)
A 		4.4
(-1.6)
A 		2
(-3)
A 		12.2
(3)
A 		6.2
(-0.5)
A 		10
B 3.5
(-2.5)
A 		5.6
(-1.9)
A 		1.8
(-3)
A 		2.6
(-2.8)
A 		22.1
(3)
A 		2
(-2.9)
A 		20
C 2.9
(-1.9)
A 		8.9
(3)
A 		2.8
(-2)
A 		2.1
(-2.6)
A 		2.8
(-2)
A 		1.6
(-3)
A 		7
avr 3
(-2.5) 		6.2
(-0.6) 		3
(-2.5) 		2.2
(-3) 		12.4
(3) 		3.3
(-2.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186722_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5458
Sequence Type Exemplar sequence
Representative Public ID F19B10.11 NCBI
Target Description F19B10.11 /REP_DB=WormBase Gene ID /WP=CE09478 /TR=O02066 /GB=AAB52922.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062203(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062203 NCBI Caenorhabditis elegans F19B10.11 (F19B10.11) mRNA, complete cds. 11/11 None
SNAP00000017109 ENSEMBL cdna:SNAP chromosome:CEL140:II:3651250:3654270:1 11/11 None
GENEFINDER00000017135 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3651250:3654270:1 11/11 None
F19B10.11 ENSEMBL cdna:known chromosome:CEL140:II:3651250:3654270:1 gene:F19B10.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3651248-3654269(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19B10.11
Entrez Gene 184674 Entrez gene
SwissProt O02066 EMBL-EBI
WormBase CE09478 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52922 Hypothetical protein F19B10.11 [Caenorhabditis elegans] ref|NP_494604.1| F19B10.11 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:186722_AT
ctcggagaaacactcaacccatccagtgccaatgctcaaagatctcaaactccacgccaa
atccccatcgcctgataaaacaggagctcgttgaagacccaaatgtgccctcgtcgtcta
cccccgtcgtttcccgggaccccatcgatgacgaattcgaggagatcatccccttcaacc
ctgtgtctgatattccgaacgtgaagcctctggtggtcccgagcccaccagagctctctc
aagttccaagcttcgaggaggcttgtgaaatctatgagagatgggaggatagggataaag
taattgaaggcgttgatttgacgacgttcctgttcaacccgcaaggctctcgtaaaatgc
cccagaaagtgagaaatgtcgtcggatcgtttacagtttttcaagactttttcacaaggg
aaaccgggatcactggacgggctgtcaacgggtattggcgtgggctggctccagatgaga
agcaggaatggggcaaaagatctgcacaactccggaagtggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGGAGAAACACTCAACCCATCCA 676 229 938 Antisense
GGGACCCCATCGATGACGAATTCGA 227 493 1073 Antisense
ATTCGAGGAGATCATCCCCTTCAAC 411 7 1092 Antisense
AACCCTGTGTCTGATATTCCGAACG 172 147 1114 Antisense
TCCGAACGTGAAGCCTCTGGTGGTC 668 593 1131 Antisense
GCTCTCTCAAGTTCCAAGCTTCGAG 710 299 1170 Antisense
GATTTGACGACGTTCCTGTTCAACC 643 425 1252 Antisense
TCAACCCGCAAGGCTCTCGTAAAAT 450 629 1271 Antisense
AACCGGGATCACTGGACGGGCTGTC 64 145 1359 Antisense
CAACGGGTATTGGCGTGGGCTGGCT 386 187 1383 Antisense
GATCTGCACAACTCCGGAAGTGGCA 91 419 1436 Antisense
Sequence Source Affymetrix Proprietary Database