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[186721_at]

Description C56G7.3 /REP_DB=WormBase Gene ID /WP=CE17608 /TR=SW:Q09292 /GB=CAA86771.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 83      6grp_total > 28      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 240
1 2 3 4 range
A 671.9
(1.2)
P 		503
(-3)
P 		523.8
(-2.5)
P 		742.6
(3)
P 		240
B 653.2
(1.4)
P 		629.6
(0.6)
P 		523.2
(-3)
P 		700.7
(3)
P 		178
C 612.2
(2.2)
P 		550.7
(-3)
P 		599.7
(1.1)
P 		621.9
(3)
P 		71
avr 645.8
(1.2) 		561.1
(-2.5) 		548.9
(-3) 		688.4
(3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 605.4
(3)
P 		490.5
(-0.2)
P 		431.1
(-1.9)
P 		391.7
(-3)
P 		546
(1.3)
P 		437
(-1.7)
P 		214
B 637.4
(3)
P 		482.8
(-0.2)
P 		346.4
(-3)
P 		434.1
(-1.2)
P 		504.5
(0.3)
P 		548.5
(1.2)
P 		291
C 468.9
(1.8)
P 		438.3
(0.7)
P 		489
(2.5)
P 		328.8
(-3)
P 		485.6
(2.4)
P 		504.5
(3)
P 		176
avr 570.6
(3) 		470.5
(-0.2) 		422.2
(-1.8) 		384.9
(-3) 		512
(1.1) 		496.7
(0.6) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 244.7
(3)
P 		109.2
(-3)
P 		136.9
(-1.8)
P 		108.7
(-3)
P 		136
B 208.3
(3)
P 		155.5
(-0.6)
P 		121.2
(-3)
P 		149.3
(-1.1)
P 		87
C 202.7
(2.6)
P 		158.3
(0.1)
P 		209
(3)
P 		104.9
(-3)
P 		104
avr 218.6
(3) 		141
(-1.8) 		155.7
(-0.9) 		121
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 111.6
(-1.7)
P 		174.4
(3)
P 		93.9
(-3)
P 		99.3
(-2.6)
P 		164.8
(2.3)
P 		106.4
(-2.1)
P 		81
B 221.8
(3)
P 		160.7
(0.3)
P 		84.1
(-3)
P 		115
(-1.7)
P 		205
(2.3)
P 		204.5
(2.2)
P 		138
C 173.8
(3)
P 		133.7
(0.8)
P 		124.4
(0.2)
P 		66.1
(-3)
P 		157.1
(2.1)
P 		168.9
(2.7)
P 		108
avr 169.1
(2.5) 		156.3
(1.6) 		100.8
(-2.5) 		93.5
(-3) 		175.6
(3) 		159.9
(1.9) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186721_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6725
Sequence Type Exemplar sequence
Representative Public ID C56G7.3 NCBI
Target Description C56G7.3 /REP_DB=WormBase Gene ID /WP=CE17608 /TR=SW:Q09292 /GB=CAA86771.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065298(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065298 NCBI Caenorhabditis elegans C56G7.3 (C56G7.3) mRNA, complete cds. 11/11 None
SNAP00000009577 ENSEMBL cdna:SNAP chromosome:CEL140:III:3389909:3392426:1 11/11 None
GENEFINDER00000009579 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3389909:3392426:1 11/11 None
C56G7.3 ENSEMBL cdna:known chromosome:CEL140:III:3389908:3392504:1 gene:C56G7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3389908-3392426(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C56G7.3
Entrez Gene 175439 Entrez gene
SwissProt Q09292 EMBL-EBI
WormBase CE17608 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6909 phagocytosis inferred from electronic annotation QuickGO AmiGO
6915 apoptosis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5856 cytoskeleton inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA86771 Hypothetical protein C56G7.3 [Caenorhabditis elegans] ref|NP_497699.1| C56G7.3 [Caenorhabditis elegans] sp|Q09292|YQL3_CAEEL Hypothetical protein C56G7.3 in chromosome III 1.0E-175
blast CAE65021 Hypothetical protein CBG09859 [Caenorhabditis briggsae] 1.0E-133
blast XP_792240 PREDICTED: similar to RNA binding motif and ELMO domain 1 [Strongylocentrotus purpuratus] 8.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR006816 EMBL-EBI Protein of unknown function DUF609 2.5E-67
Sequence
Target Sequence 
>C. ELEGANS:186721_AT
aactcgctcaaataccctatgatcatgaaaacggaacacactggcttctcctctcggact
actttaacaatgtttcaagatccctgatgacgtcatcagaatactctcacgtcactaatc
cgtcacgtgttggcgcgcattgggttactgtaggctttcagtcggcgacaccgcacacgg
attttcgaggttgcggagttcttggcctacttcaaatgcacacttttacgcagagagtac
cggcgaatttacttcgagcaattgtacttcttgccactactgaaccgaatgatttcccac
ttgccgttgtttcaatcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCGCTCAAATACCCTATGATCA 8 143 398 Antisense
GAAAACGGAACACACTGGCTTCTCC 50 353 424 Antisense
TCTCCTCTCGGACTACTTTAACAAT 234 611 444 Antisense
CAGAATACTCTCACGTCACTAATCC 248 205 494 Antisense
GTCACTAATCCGTCACGTGTTGGCG 325 465 508 Antisense
GACACCGCACACGGATTTTCGAGGT 612 367 564 Antisense
TCGAGGTTGCGGAGTTCTTGGCCTA 683 597 582 Antisense
GGCCTACTTCAAATGCACACTTTTA 381 543 601 Antisense
AATTGTACTTCTTGCCACTACTGAA 459 179 657 Antisense
TGAACCGAATGATTTCCCACTTGCC 41 575 678 Antisense
CCCACTTGCCGTTGTTTCAATCAAT 101 259 693 Antisense
Sequence Source Affymetrix Proprietary Database