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[186720_at]

Description T28A11.19 /REP_DB=WormBase Gene ID /WP=CE14315 /TR=P91517 /GB=AAC48127.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 09      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 4.5
(-3)
A 		54.3
(-1.4)
A 		45.5
(-1.7)
A 		189.4
(3)
A 		185
B 4.5
(-2.9)
A 		3.1
(-3)
A 		3.7
(-3)
A 		149.4
(3)
A 		146
C 15.4
(-3)
A 		27.4
(-2.1)
A 		27.7
(-2.1)
A 		95.3
(3)
A 		80
avr 8.1
(-3) 		28.3
(-2.1) 		25.6
(-2.2) 		144.7
(3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 3.2
(-3)
A 		43.1
(-1.5)
A 		128.5
(1.6)
P 		165.4
(3)
P 		84.2
(-0)
A 		26.7
(-2.1)
A 		162
B 17.3
(-3)
A 		53.8
(-1.3)
A 		92.2
(0.4)
P 		147.9
(3)
P 		138.4
(2.6)
M 		53.3
(-1.3)
A 		131
C 25.1
(-3)
A 		53.4
(-1.3)
A 		65.4
(-0.6)
A 		125.5
(3)
A 		98.5
(1.4)
P 		46.1
(-1.7)
A 		100
avr 15.2
(-3) 		50.1
(-1.4) 		95.4
(0.7) 		146.3
(3) 		107
(1.2) 		42
(-1.8) 		131
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 1.6
(-3)
A 		11.8
(-0.7)
A 		11.9
(-0.6)
A 		27.7
(3)
A 		26
B 1.4
(-2.9)
A 		0.8
(-3)
A 		0.8
(-3)
A 		31.8
(3)
A 		31
C 5.1
(-3)
A 		7.9
(-1.5)
A 		9.7
(-0.5)
A 		16.1
(3)
A 		11
avr 2.7
(-3) 		6.8
(-1.9) 		7.5
(-1.7) 		25.2
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 0.6
(-3)
A 		15.3
(-0.9)
A 		28
(1)
P 		42
(3)
P 		25.4
(0.6)
A 		6.5
(-2.1)
A 		41
B 6
(-3)
A 		17.9
(-1.6)
A 		22.4
(-1)
P 		39.2
(1)
P 		56.2
(3)
M 		19.9
(-1.3)
A 		50
C 9.3
(-3)
A 		16.3
(-1.1)
A 		16.6
(-1.1)
A 		25.2
(1.2)
A 		31.9
(3)
P 		15.4
(-1.4)
A 		23
avr 5.3
(-3) 		16.5
(-0.9) 		22.3
(0.1) 		35.5
(2.6) 		37.8
(3) 		13.9
(-1.4) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186720_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15057
Sequence Type Exemplar sequence
Representative Public ID T28A11.19 NCBI
Target Description T28A11.19 /REP_DB=WormBase Gene ID /WP=CE14315 /TR=P91517 /GB=AAC48127.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071499(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071499 NCBI Caenorhabditis elegans T28A11.19 (T28A11.19) mRNA, complete cds. 11/11 None
SNAP00000028212 ENSEMBL cdna:SNAP chromosome:CEL140:V:3268636:3269332:-1 11/11 None
GENEFINDER00000028222 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3268636:3269332:-1 11/11 None
T28A11.19 ENSEMBL cdna:known chromosome:CEL140:V:3268636:3269332:-1 gene:T28A11.19 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3268635-3269332(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T28A11.19
Entrez Gene 189024 Entrez gene
SwissProt P91517 EMBL-EBI
WormBase CE14315 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503900 T28A11.19 [Caenorhabditis elegans] gb|AAC48127.1| Hypothetical protein T28A11.19 [Caenorhabditis elegans] 1.0E-107
blast AAB37586 Hypothetical protein T20D4.11 [Caenorhabditis elegans] ref|NP_503950.1| T20D4.11 [Caenorhabditis elegans] 3.0E-96
blast NP_503895 T28A11.16 [Caenorhabditis elegans] gb|AAC48125.1| Hypothetical protein T28A11.16 [Caenorhabditis elegans] 2.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 4.9E-81
Sequence
Target Sequence 
>C. ELEGANS:186720_AT
atttgctatactcgcagcagtcctccttgcactcgcttatggagatgacgaagacgagga
agcgagtgagttagagagaagaagaattagaaactgtccagaagtcacttttaaaagaat
gaccggttgcgtttgggagtttggaagatttttgaaaaaagtactttttctggatttgga
gcagaggactctggatagatttagaaaatcgtgcctttcaatggctgaatgttttgatct
tattgagtgtaaagaaactggcaaattttcaagaggcaaaagaatcaaggactcttgtga
cgtcatgaactacttatccaaagattttgtgccctgtcttaaaagactggaaagattaga
tccggcaccaacgtgtttcaacaaatggaaaccattttctgatttgaatgaagttggacc
tgacacaaccccagaggaaatggaggaactgtgtaaaaatatgttgggaaaagacaattg
catgaaggacctagtcagcagaacttgtggaggagtcatgtcgcaagagttggttgatcg
tttcgaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGCTATACTCGCAGCAGTCCTC 543 15 30 Antisense
TGCACTCGCTTATGGAGATGACGAA 701 577 57 Antisense
TAGAAACTGTCCAGAAGTCACTTTT 251 649 117 Antisense
GGTTGCGTTTGGGAGTTTGGAAGAT 698 505 154 Antisense
GAAAATCGTGCCTTTCAATGGCTGA 5 353 233 Antisense
AATGGCTGAATGTTTTGATCTTATT 518 161 249 Antisense
GATTTTGTGCCCTGTCTTAAAAGAC 73 425 352 Antisense
AAGATTAGATCCGGCACCAACGTGT 582 155 381 Antisense
ATCCGGCACCAACGTGTTTCAACAA 105 37 389 Antisense
GGACCTAGTCAGCAGAACTTGTGGA 544 521 516 Antisense
AAGAGTTGGTTGATCGTTTCGAAGC 106 135 554 Antisense
Sequence Source Affymetrix Proprietary Database