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[186719_s_at]

Description ZK1248.11 /REP_DB=WormBase Gene ID /WP=CE02895 /TR=Q23420 /GB=AAC71092.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 85      4grp_highest_8_8 > 47      4grp_high_8_8 > 12      6grp_highest_nonorm > 73      6grp_total > 76      4grp_total > 20      6grp_highest_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 462.7
(-1)
P 		460.2
(-1.1)
P 		395
(-3)
P 		598.3
(3)
P 		203
B 487.5
(-0.9)
P 		441.2
(-2.9)
P 		440
(-3)
P 		577.4
(3)
P 		137
C 549
(1.6)
P 		485.8
(-0.3)
P 		396.7
(-3)
P 		593.4
(3)
P 		197
avr 499.7
(-0) 		462.4
(-1.3) 		410.6
(-3) 		589.7
(3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 396
1 2 3 4 5 6 range
A 398
(-3)
P 		436.6
(-2.2)
P 		697.6
(3)
P 		535.4
(-0.2)
P 		606.6
(1.2)
P 		615.4
(1.4)
P 		300
B 462.9
(-3)
P 		544.2
(-1.5)
P 		691.3
(1.1)
P 		479.6
(-2.7)
P 		600.3
(-0.5)
P 		794.4
(3)
P 		332
C 437.1
(-3)
P 		587
(-0.3)
P 		448.3
(-2.8)
P 		513.2
(-1.6)
P 		590.8
(-0.2)
P 		771.7
(3)
P 		335
avr 432.7
(-3) 		522.6
(-1.2) 		612.4
(0.7) 		509.4
(-1.4) 		599.2
(0.4) 		727.2
(3) 		295
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 168.5
(3)
P 		99.9
(-2.1)
P 		103.3
(-1.8)
P 		87.6
(-3)
P 		81
B 155.5
(3)
P 		109
(-2.2)
P 		102
(-3)
P 		123
(-0.6)
P 		54
C 181.7
(3)
P 		139.7
(-0.1)
P 		138.3
(-0.2)
P 		100
(-3)
P 		82
avr 168.6
(3) 		116.2
(-1.8) 		114.5
(-2) 		103.5
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 73.4
(-3)
P 		155.3
(1.5)
P 		151.9
(1.3)
P 		135.8
(0.4)
P 		183
(3)
P 		149.8
(1.2)
P 		110
B 161.1
(-1.8)
P 		181.1
(-1.1)
P 		167.9
(-1.5)
P 		127
(-3)
P 		243.9
(1.1)
P 		296.2
(3)
P 		169
C 162
(-0.7)
P 		179.1
(-0.1)
P 		114.1
(-2.6)
P 		103.2
(-3)
P 		191.2
(0.4)
P 		258.3
(3)
P 		155
avr 132.2
(-2.5) 		171.8
(-0.4) 		144.6
(-1.8) 		122
(-3) 		206
(1.5) 		234.8
(3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186719_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4873
Sequence Type Exemplar sequence
Representative Public ID ZK1248.11 NCBI
Target Description ZK1248.11 /REP_DB=WormBase Gene ID /WP=CE02895 /TR=Q23420 /GB=AAC71092.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062756(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062756 NCBI Caenorhabditis elegans ZK1248.11 (ZK1248.11) mRNA, complete cds. 11/11 None
SNAP00000041377 ENSEMBL cdna:SNAP chromosome:CEL140:II:5827697:5828551:-1 11/11 None
GENEFINDER00000041402 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5827697:5828551:-1 11/11 None
ZK1248.11.2 ENSEMBL cdna:known chromosome:CEL140:II:5827581:5828553:-1 gene:ZK1248.11 11/11 None
ZK1248.11.1 ENSEMBL cdna:known chromosome:CEL140:II:5827615:5828551:-1 gene:ZK1248.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5827693-5828548(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1248.11
Entrez Gene 173987 Entrez gene
SwissProt Q23420 EMBL-EBI
WormBase CE02895 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71092 Hypothetical protein ZK1248.11 [Caenorhabditis elegans] ref|NP_495157.1| ZK1248.11 [Caenorhabditis elegans] 1.0E-103
blast CAE59198 Hypothetical protein CBG02509 [Caenorhabditis briggsae] 2.0E-40
Sequence
Target Sequence 
>C. ELEGANS:186719_S_AT
tacccagctcgccactagtatggaaattattcgaaaaagtctgagaaaggctgctgagga
tgttcttcatatcaattcaaaaaatgctatttcaaatgaagtagattctgaagaattcaa
agaaacattgatgaaagatgcaatgaagttgatggaattggagactgaaggtgctcaaat
gcaacacatttttgaagcgttgcataatgacctgaaagatggttcagacgaggttccgaa
tgaaaaagcattggaggagttatacgagaaggcgaaaaaaacccataaaaatgtgaaagg
cgagcgacagtacttcaaagacattatcaaatctataagggatgaaagtaaaaacgatga
aaatgaaatggaagtgatgcaagttcaacatagtagaaaggatccaatttcgaagaaaga
tattgtcaatccagttatcagtaagaactgtggacacgtctacgatagggattcaattca
tgagtttgctggcaaaaagcgagttatcaagtgtgcaatgcaaggatgctctgaaactat
caacatcggccaactcgccgattatccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCCAGCTCGCCACTAGTATGGAA 303 647 18 Antisense
GAAAGGCTGCTGAGGATGTTCTTCA 184 361 62 Antisense
GACTGAAGGTGCTCAAATGCAACAC 526 375 180 Antisense
GAAGCGTTGCATAATGACCTGAAAG 505 341 211 Antisense
GGCGAGCGACAGTACTTCAAAGACA 460 541 316 Antisense
AGAACTGTGGACACGTCTACGATAG 270 67 461 Antisense
GATTCAATTCATGAGTTTGCTGGCA 271 431 487 Antisense
AAAGCGAGTTATCAAGTGTGCAATG 446 123 513 Antisense
GTGTGCAATGCAAGGATGCTCTGAA 539 485 528 Antisense
TGAAACTATCAACATCGGCCAACTC 433 573 549 Antisense
CATCGGCCAACTCGCCGATTATCCC 527 197 561 Antisense
Sequence Source Affymetrix Proprietary Database