[Home] | [Total List]

[186718_at]

Description F46C5.7 /REP_DB=WormBase Gene ID /WP=CE03348 /TR=SW:P52883 /GB=CAA91049.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 59      4grp_high_8_8 > 11      6grp_total > 79      4grp_total > 13      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 86.2
(-0.3)
P 		47
(-2.3)
P 		33.6
(-3)
A 		151.8
(3)
P 		118
B 120.7
(3)
P 		17.4
(-3)
A 		31
(-2.2)
A 		73.8
(0.3)
P 		103
C 98.3
(-0.9)
P 		58.2
(-2.3)
P 		36.1
(-3)
P 		213.1
(3)
P 		177
avr 101.7
(0.6) 		40.9
(-2.6) 		33.6
(-3) 		146.2
(3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 36.7
(-3)
A 		45
(-0.6)
P 		48.4
(0.3)
P 		39.4
(-2.2)
A 		57.7
(3)
P 		37.8
(-2.7)
A 		21
B 79.1
(1.9)
P 		84.5
(2.6)
P 		53.4
(-1.4)
A 		41.4
(-3)
P 		84.8
(2.6)
P 		87.7
(3)
P 		46
C 63.5
(0.3)
P 		61.5
(-0)
P 		43.9
(-3)
A 		65.4
(0.6)
A 		57.7
(-0.7)
P 		79.6
(3)
P 		36
avr 59.8
(0.4) 		63.7
(1.6) 		48.6
(-3) 		48.7
(-3) 		66.7
(2.5) 		68.4
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 31.4
(3)
P 		10.2
(-2.6)
P 		8.8
(-3)
A 		22.2
(0.6)
P 		23
B 38.5
(3)
P 		4.3
(-3)
A 		7.2
(-2.5)
A 		15.7
(-1)
P 		34
C 32.5
(2.1)
P 		16.7
(-1.9)
P 		12.6
(-3)
P 		35.9
(3)
P 		23
avr 34.1
(3) 		10.4
(-2.8) 		9.5
(-3) 		24.6
(0.7) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 6.8
(-3)
A 		16
(2.2)
P 		10.5
(-0.9)
P 		10
(-1.2)
A 		17.4
(3)
P 		9.2
(-1.6)
A 		11
B 27.5
(1.2)
P 		28.1
(1.4)
P 		13
(-2.5)
A 		11
(-3)
P 		34.4
(3)
P 		32.7
(2.6)
P 		23
C 23.6
(1.8)
P 		18.8
(-0)
P 		11.2
(-3)
A 		13.2
(-2.2)
A 		18.7
(-0.1)
P 		26.6
(3)
P 		15
avr 19.3
(0.9) 		21
(1.8) 		11.6
(-2.9) 		11.4
(-3) 		23.5
(3) 		22.8
(2.7) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186718_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3260
Sequence Type Exemplar sequence
Representative Public ID F46C5.7 NCBI
Target Description F46C5.7 /REP_DB=WormBase Gene ID /WP=CE03348 /TR=SW:P52883 /GB=CAA91049.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063482(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063482 NCBI Caenorhabditis elegans F46C5.7 (F46C5.7) mRNA, complete cds. 11/11 None
SNAP00000022657 ENSEMBL cdna:SNAP chromosome:CEL140:II:8839309:8839902:1 11/11 None
GENEFINDER00000022664 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8839309:8840084:1 11/11 None
F46C5.7 ENSEMBL cdna:known chromosome:CEL140:II:8839309:8840084:1 gene:F46C5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8839305-8840081(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46C5.7
Entrez Gene 185846 Entrez gene
SwissProt P52883 EMBL-EBI
WormBase CE03348 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91049 Hypothetical protein F46C5.7 [Caenorhabditis elegans] ref|NP_495883.1| F46C5.7 [Caenorhabditis elegans] sp|P52883|YAF7_CAEEL Hypothetical protein F46C5.7 in chromosome II 1.0E-101
blast CAE59748 Hypothetical protein CBG03193 [Caenorhabditis briggsae] 9.0E-83
blast CAA91049 Hypothetical protein F46C5.7 [Caenorhabditis elegans] ref|NP_495883.1| F46C5.7 [Caenorhabditis elegans] sp|P52883|YAF7_CAEEL Hypothetical protein F46C5.7 in chromosome II 4.0E-77
blast CAE59748 Hypothetical protein CBG03193 [Caenorhabditis briggsae] 7.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495883.1 4 31-53,57-79,91-113,128-150
F46C5.7 4 31-53,57-79,91-113,128-150
SNAP00000022657 4 31-53,57-79,91-113,128-150
GENEFINDER00000022664 4 31-53,57-79,91-113,128-150
Sequence
Target Sequence 
>C. ELEGANS:186718_AT
aatagctcttttatgccattctggcgccgaactgctttcgtttacaaatgtgaattggca
ttcagtatattaattctattctgtgcatttgctgaactgattttctatgattgtttcgtg
atattttttctgatgatcattgcttcattcgttttcgttcttctttatcttgagttctac
ttcggaagtgtctacaattgtccagctcttcttcatcttcacactttgagtgctgcattc
atgtcaatggtttgttggctttcagttcttattccaatattttttggagagtctatctat
atcgcaagccgttatgttgctcatgtgatttacaagtactacggttgccaagtcatattt
ggatctctacttaccacatttgctgcagcttcttttgccagacgtaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATAGCTCTTTTATGCCATTCTGGC 519 171 67 Antisense
GCGCCGAACTGCTTTCGTTTACAAA 45 289 90 Antisense
ATCATTGCTTCATTCGTTTTCGTTC 386 31 202 Antisense
GTTCTTCTTTATCTTGAGTTCTACT 128 445 223 Antisense
AGTGTCTACAATTGTCCAGCTCTTC 643 59 253 Antisense
TCTTCTTCATCTTCACACTTTGAGT 693 615 273 Antisense
GTTTGTTGGCTTTCAGTTCTTATTC 480 451 316 Antisense
AGAGTCTATCTATATCGCAAGCCGT 352 69 354 Antisense
AGTACTACGGTTGCCAAGTCATATT 560 59 401 Antisense
TCTACTTACCACATTTGCTGCAGCT 487 613 432 Antisense
TGCAGCTTCTTTTGCCAGACGTAAA 215 579 450 Antisense
Sequence Source Affymetrix Proprietary Database