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[186716_at]

Description ZK637.4 /REP_DB=WormBase Gene ID /WP=CE00435 /TR=SW:P30637 /GB=CAA77451.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 25      4grp_high_8_8 > 19      6grp_total > 28      4grp_total > 21      6grp_high1_sub > 01_02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 56.4
(-0.7)
P 		46.1
(-1.4)
P 		19.1
(-3)
A 		117.5
(3)
A 		98
B 75.8
(2.7)
P 		78.5
(3)
A 		28.6
(-3)
P 		72.2
(2.2)
P 		50
C 95.7
(2.3)
P 		57.9
(-1.2)
P 		38.6
(-3)
P 		103
(3)
P 		64
avr 76
(1.1) 		60.8
(-0.2) 		28.8
(-3) 		97.6
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 96.1
(3)
M 		65.9
(0)
P 		35.7
(-3)
A 		35.9
(-3)
A 		57.4
(-0.8)
P 		60.5
(-0.5)
P 		60
B 67
(1.3)
P 		69.4
(1.8)
P 		45.7
(-3)
A 		53.9
(-1.3)
P 		75.5
(3)
M 		63.3
(0.5)
P 		30
C 78.6
(1.5)
P 		91.6
(3)
P 		38.2
(-3)
P 		72.4
(0.8)
P 		56.3
(-1)
P 		54.5
(-1.2)
P 		53
avr 80.6
(3) 		75.6
(2.3) 		39.9
(-3) 		54.1
(-0.9) 		63.1
(0.4) 		59.4
(-0.1) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 20.5
(3)
P 		10
(-1.1)
P 		5
(-3)
A 		17.2
(1.7)
A 		16
B 24.2
(3)
P 		19.4
(1.4)
A 		6.6
(-3)
P 		15.4
(0)
P 		18
C 31.7
(3)
P 		16.7
(-1.9)
P 		13.4
(-3)
P 		17.4
(-1.7)
P 		18
avr 25.5
(3) 		15.4
(-0.5) 		8.3
(-3) 		16.7
(-0.1) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 17.7
(0.8)
M 		23.4
(3)
P 		7.8
(-3)
A 		9.1
(-2.5)
A 		17.3
(0.7)
P 		14.7
(-0.3)
P 		16
B 23.3
(0.7)
P 		23.1
(0.7)
P 		11.1
(-3)
A 		14.3
(-2)
P 		30.7
(3)
M 		23.6
(0.8)
P 		20
C 29.1
(3)
P 		28
(2.7)
P 		9.7
(-3)
P 		14.6
(-1.5)
P 		18.2
(-0.4)
P 		18.2
(-0.4)
P 		19
avr 23.4
(2.5) 		24.8
(3) 		9.5
(-3) 		12.7
(-1.7) 		22.1
(1.9) 		18.8
(0.6) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186716_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7423
Sequence Type Exemplar sequence
Representative Public ID ZK637.4 NCBI
Target Description ZK637.4 /REP_DB=WormBase Gene ID /WP=CE00435 /TR=SW:P30637 /GB=CAA77451.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066563(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066563 NCBI Caenorhabditis elegans ZK637.4 (ZK637.4) mRNA, complete cds. 11/11 None
SNAP00000013201 ENSEMBL cdna:SNAP chromosome:CEL140:III:8894115:8894558:1 11/11 None
GENEFINDER00000013232 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8894115:8894558:1 11/11 None
ZK637.4 ENSEMBL cdna:known chromosome:CEL140:III:8894115:8894558:1 gene:ZK637.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8894110-8894554(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK637.4
Entrez Gene 191370 Entrez gene
SwissProt P30637 EMBL-EBI
WormBase CE00435 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA77451 Hypothetical protein ZK637.4 [Caenorhabditis elegans] ref|NP_498964.1| ZK637.4 [Caenorhabditis elegans] sp|P30637|YOU4_CAEEL Hypothetical protein ZK637.4 in chromosome III 4.0E-50
blast CAE57613 Hypothetical protein CBG00594 [Caenorhabditis briggsae] 3.0E-22
Sequence
Target Sequence 
>C. ELEGANS:186716_AT
gaatgacgtggagcggcagagcaaatattcgccgaaatatgttccaaacaacagtctgaa
agagcgaattctggagtttttggattattacattgcgccattgaaactgtatcttctgtc
ttacccgatgccggattgcctttgggacaatcgaaaattgagattgaaggccagtggtgt
gcaagtgactccgagctccgaaccagttcatatcgatgatcgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGACGTGGAGCGGCAGAGCAAA 623 331 42 Antisense
GGCAGAGCAAATATTCGCCGAAATA 91 535 56 Antisense
TTCGCCGAAATATGTTCCAAACAAC 646 695 69 Antisense
GAATTCTGGAGTTTTTGGATTATTA 171 325 107 Antisense
GGATTATTACATTGCGCCATTGAAA 668 507 123 Antisense
ACATTGCGCCATTGAAACTGTATCT 186 105 131 Antisense
GATGCCGGATTGCCTTTGGGACAAT 116 415 168 Antisense
TTGAGATTGAAGGCCAGTGGTGTGC 146 707 199 Antisense
AGTGGTGTGCAAGTGACTCCGAGCT 478 59 214 Antisense
TCCGAGCTCCGAACCAGTTCATATC 174 593 231 Antisense
GAACCAGTTCATATCGATGATCGTC 590 345 241 Antisense
Sequence Source Affymetrix Proprietary Database