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[186714_s_at]

Description ZK512.7 /REP_DB=WormBase Gene ID /WP=CE00413 /TR=SW:P34645 /GB=CAA80147.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 56      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 5.9
(-3)
A 		8
(-2.9)
A 		117.9
(3)
M 		7.2
(-2.9)
A 		112
B 3.1
(-2.9)
A 		41.5
(-0.8)
A 		110.7
(3)
A 		1.5
(-3)
A 		109
C 16.9
(-3)
A 		52
(0.7)
A 		73.4
(3)
P 		40.5
(-0.5)
A 		57
avr 8.6
(-3) 		33.8
(-1.4) 		100.7
(3) 		16.4
(-2.5) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 390
1 2 3 4 5 6 range
A 2.6
(-3)
A 		65.3
(-1.8)
P 		258
(2)
P 		200.5
(0.9)
P 		308
(3)
P 		122.3
(-0.6)
P 		305
B 3.2
(-3)
A 		88.7
(-1.5)
P 		353
(3)
P 		229.9
(0.9)
P 		296.3
(2)
P 		135.6
(-0.7)
P 		350
C 4.1
(-3)
A 		87
(-1.7)
P 		146.7
(-0.8)
P 		248.3
(0.8)
P 		393
(3)
P 		139.4
(-0.9)
P 		389
avr 3.3
(-3) 		80.3
(-1.6) 		252.6
(1.5) 		226.2
(1.1) 		332.4
(3) 		132.4
(-0.6) 		329
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 2.1
(-2.8)
A 		1.7
(-2.9)
A 		30.8
(3)
M 		1.1
(-3)
A 		30
B 1
(-2.8)
A 		10.3
(-0.6)
A 		25.7
(3)
A 		0.3
(-3)
A 		25
C 5.6
(-3)
A 		14.9
(-0.2)
A 		25.6
(3)
P 		6.8
(-2.6)
A 		20
avr 2.9
(-3) 		9
(-1.5) 		27.4
(3) 		2.7
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 0.5
(-3)
A 		23.2
(-1.5)
P 		56.2
(0.6)
P 		50.9
(0.3)
P 		92.9
(3)
P 		29.8
(-1.1)
P 		92
B 1.1
(-3)
A 		29.5
(-1.6)
P 		85.7
(1.3)
P 		60.9
(0)
P 		120.4
(3)
P 		50.6
(-0.5)
P 		119
C 1.5
(-3)
A 		26.5
(-1.8)
P 		37.3
(-1.3)
P 		49.9
(-0.7)
P 		127.2
(3)
P 		46.7
(-0.8)
P 		126
avr 1
(-3) 		26.4
(-1.6) 		59.7
(0.1) 		53.9
(-0.2) 		113.5
(3) 		42.4
(-0.8) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186714_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7705
Sequence Type Exemplar sequence
Representative Public ID ZK512.7 NCBI
Target Description ZK512.7 /REP_DB=WormBase Gene ID /WP=CE00413 /TR=SW:P34645 /GB=CAA80147.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066623(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066623 NCBI Caenorhabditis elegans ZK512.7 (ZK512.7) mRNA, complete cds. 11/11 A 
SNAP00000002533 ENSEMBL cdna:SNAP chromosome:CEL140:III:9138035:9138577:-1 11/11 None
ZK512.7 ENSEMBL cdna:known chromosome:CEL140:III:9137991:9138589:-1 gene:ZK512.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9138030-9138573(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK512.7
Entrez Gene 176290 Entrez gene
SwissProt P34645 EMBL-EBI
WormBase CE00413 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80147 Hypothetical protein ZK512.7 [Caenorhabditis elegans] ref|NP_499024.1| ZK512.7 [Caenorhabditis elegans] sp|P34645|YOQ7_CAEEL Hypothetical protein ZK512.7 in chromosome III 1.0E-68
blast CAE62657 Hypothetical protein CBG06795 [Caenorhabditis briggsae] emb|CAE62655.1| Hypothetical protein CBG06793 [Caenorhabditis briggsae] 5.0E-45
blast AAF16611 Hypothetical protein F43C11.3 [Caenorhabditis elegans] ref|NP_494251.1| F43C11.3 [Caenorhabditis elegans] 7.0E-44
Sequence
Target Sequence 
>C. ELEGANS:186714_S_AT
ccgactcgacttatctcactggagaacgcactccagtgacagtctatcgcagaattctga
gacctgctagaattacatttactggagatggagtgattacagacagctggcaaggaacta
gtgatgctgttgaaatggaatcatggacattaaatagacgaccaactattgatggatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGACTCGACTTATCTCACTGGAGA 148 263 218 Antisense
GACTTATCTCACTGGAGAACGCACT 663 371 225 Antisense
GAGAACGCACTCCAGTGACAGTCTA 424 391 239 Antisense
ACGCACTCCAGTGACAGTCTATCGC 319 91 243 Antisense
CACTCCAGTGACAGTCTATCGCAGA 486 197 246 Antisense
CAGAATTCTGAGACCTGCTAGAATT 63 205 267 Antisense
TGAGACCTGCTAGAATTACATTTAC 19 569 275 Antisense
GATGGAGTGATTACAGACAGCTGGC 579 407 304 Antisense
AGACAGCTGGCAAGGAACTAGTGAT 491 71 318 Antisense
AATCATGGACATTAAATAGACGACC 272 167 356 Antisense
ATAGACGACCAACTATTGATGGATC 346 21 371 Antisense
Sequence Source Affymetrix Proprietary Database