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[186711_s_at]

Description B0464.6 /REP_DB=WormBase Gene ID /WP=CE00020 /TR=SW:Q03564 /GB=CAA79539.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 96      6grp_total > 86      4grp_total > 62      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 613
1 2 3 4 range
A 875.9
(0)
P 		663
(-2.5)
P 		1121.9
(3)
P 		623.2
(-3)
P 		499
B 1013.6
(3)
P 		844.6
(1)
P 		867.8
(1.3)
P 		508.7
(-3)
P 		505
C 957.8
(3)
P 		674.2
(-2.9)
P 		727.9
(-1.8)
P 		671.8
(-3)
P 		286
avr 949.1
(3) 		727.3
(-0.8) 		905.9
(2.3) 		601.2
(-3) 		348

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 833
1 2 3 4 5 6 range
A 734.6
(-1.7)
P 		729.7
(-1.8)
P 		652.9
(-2.4)
P 		575.8
(-3)
P 		993.3
(0.4)
P 		1322.2
(3)
P 		746
B 538.6
(-2.7)
P 		614.1
(-2.1)
P 		494.2
(-3)
P 		992.1
(0.8)
P 		787.8
(-0.7)
P 		1276.1
(3)
P 		782
C 579.2
(-2.6)
P 		651.6
(-2.1)
P 		528.7
(-3)
P 		972.8
(0.3)
P 		825.5
(-0.8)
P 		1326.9
(3)
P 		798
avr 617.5
(-2.5) 		665.1
(-2.1) 		558.6
(-3) 		846.9
(-0.7) 		868.9
(-0.5) 		1308.4
(3) 		750
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 318.9
(3)
P 		143.9
(-1.6)
P 		293.3
(2.3)
P 		91.2
(-3)
P 		228
B 323.2
(3)
P 		208.6
(-0.2)
P 		201.1
(-0.4)
P 		108.4
(-3)
P 		215
C 317.1
(3)
P 		193.8
(-0.6)
P 		253.7
(1.1)
P 		113.3
(-3)
P 		204
avr 319.7
(3) 		182.1
(-0.8) 		249.4
(1) 		104.3
(-3) 		215

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 356
1 2 3 4 5 6 range
A 135.4
(-3)
P 		259.5
(1)
P 		142.2
(-2.8)
P 		146
(-2.7)
P 		299.7
(2.3)
P 		321.9
(3)
P 		187
B 187.4
(-1.9)
P 		204.4
(-1.6)
P 		120
(-3)
P 		262.8
(-0.6)
P 		320.1
(0.4)
P 		475.8
(3)
P 		356
C 214.7
(-1.4)
P 		198.8
(-1.8)
P 		134.6
(-3)
P 		195.6
(-1.8)
P 		267.1
(-0.4)
P 		444.2
(3)
P 		310
avr 179.2
(-2) 		220.9
(-1.1) 		132.3
(-3) 		201.5
(-1.5) 		295.6
(0.5) 		414
(3) 		282
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186711_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6360
Sequence Type Exemplar sequence
Representative Public ID B0464.6 NCBI
Target Description B0464.6 /REP_DB=WormBase Gene ID /WP=CE00020 /TR=SW:Q03564 /GB=CAA79539.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066682(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066682 NCBI Caenorhabditis elegans B0464.6 (B0464.6) mRNA, complete cds. 11/11 None
SNAP00000014944 ENSEMBL cdna:SNAP chromosome:CEL140:III:9463017:9465366:-1 11/11 None
GENEFINDER00000014955 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9463017:9465366:-1 11/11 None
B0464.6.2 ENSEMBL cdna:known chromosome:CEL140:III:9462885:9465861:-1 gene:B0464.6 11/11 None
B0464.6.1 ENSEMBL cdna:known chromosome:CEL140:III:9462885:9465373:-1 gene:B0464.6 11/11 None
B0464.6.3 ENSEMBL cdna:known chromosome:CEL140:III:9462892:9465375:-1 gene:B0464.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9463012-9465260(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0464.6
Entrez Gene 176329 Entrez gene
SwissProt Q03564 EMBL-EBI
WormBase CE33965 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA79539 Hypothetical protein B0464.6 [Caenorhabditis elegans] ref|NP_499083.2| B0464.6 [Caenorhabditis elegans] sp|Q03564|YKD6_CAEEL Hypothetical protein B0464.6 in chromosome III 0.0
blast CAE65211 Hypothetical protein CBG10086 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499083.2 1 96-118
B0464.6.2 1 96-118
B0464.6.1 1 96-118
B0464.6.3 1 96-118
SNAP00000014944 1 96-118
GENEFINDER00000014955 1 96-118
Sequence
Target Sequence 
>C. ELEGANS:186711_S_AT
caaatcttcagatcttccattccttcttccattcctcagtgtccatccaaatcaaaaata
tctgatcagtcgaatcaaagagctttgtgccactcaatttatggatgcatacaaatggaa
ttcgggtggttcagagccaaccgatgataacgatcaaatgacacgtcttgttcgccgtga
atggaatgattcgttgccaactgatgcagttctcgtattcgacatttttctggcttatat
ggatgctcaactcaattccaattgtctcgttggagatagtcgccttgaccagccattcac
cagccgattctgtgtcaaaaatgctcaaaaaccatcatctgctcaacgtactccattcag
tttctatcttcacatggttacaaaatctcctccacacgctgaatttgtgcacattgatga
aaatggatatgcaattaagtgcaacgttctccgtcaatcacccaatctcttccgtgctat
cgctcaatttattcattttgtgaaacatgaaaatcatggatatctggatcagacctcaat
cggacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAATCTTCAGATCTTCCATTCCTT 459 193 1263 Antisense
TTCCTCAGTGTCCATCCAAATCAAA 601 699 1294 Antisense
ATGACACGTCTTGTTCGCCGTGAAT 498 43 1420 Antisense
ACTGATGCAGTTCTCGTATTCGACA 50 97 1462 Antisense
GTTGGAGATAGTCGCCTTGACCAGC 442 435 1531 Antisense
CATTCACCAGCCGATTCTGTGTCAA 62 217 1556 Antisense
ATCTGCTCAACGTACTCCATTCAGT 710 33 1599 Antisense
CTCCATTCAGTTTCTATCTTCACAT 16 237 1613 Antisense
TCTCCTCCACACGCTGAATTTGTGC 322 611 1648 Antisense
TAAGTGCAACGTTCTCCGTCAATCA 469 633 1698 Antisense
TCTGGATCAGACCTCAATCGGACCA 97 607 1785 Antisense
Sequence Source Affymetrix Proprietary Database