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[186710_at]

Description C24H12.11 /REP_DB=WormBase Gene ID /WP=CE08365 /TR=O17163 /GB=AAB71207.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 1.6
(-3)
A 		1.6
(-3)
A 		6.4
(-1.8)
A 		25.9
(3)
A 		24
B 28.5
(3)
A 		8.3
(-1.6)
A 		13
(-0.6)
A 		2.4
(-3)
A 		26
C 4.2
(-2.7)
A 		2.1
(-3)
A 		6.9
(-2.4)
A 		48.5
(3)
A 		46
avr 11.4
(-0.9) 		4
(-3) 		8.8
(-1.7) 		25.6
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 32.5
(3)
A 		3.6
(-2.8)
A 		5.6
(-2.4)
A 		15.9
(-0.3)
A 		2.5
(-3)
A 		23.8
(1.3)
A 		30
B 22.1
(3)
A 		14.4
(0.7)
A 		18.7
(2)
A 		20.7
(2.6)
A 		1.6
(-3)
A 		13.3
(0.4)
A 		21
C 25.2
(2)
A 		15.7
(-0.1)
A 		29.8
(3)
A 		28.3
(2.7)
A 		2.7
(-3)
A 		26.4
(2.2)
A 		27
avr 26.6
(3) 		11.2
(-0.8) 		18
(0.9) 		21.6
(1.8) 		2.3
(-3) 		21.2
(1.7) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.6
(-2.6)
A 		0.4
(-3)
A 		1.7
(-0.7)
A 		3.8
(3)
A 		3
B 9.1
(3)
A 		2
(-2)
A 		3
(-1.3)
A 		0.5
(-3)
A 		9
C 1.4
(-2.4)
A 		0.6
(-3)
A 		2.4
(-1.6)
A 		8.2
(3)
A 		8
avr 3.7
(2.1) 		1
(-3) 		2.4
(-0.4) 		4.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 6
(3)
A 		1.3
(-2.4)
A 		1.2
(-2.5)
A 		4
(0.7)
A 		0.8
(-3)
A 		5.8
(2.8)
A 		5
B 7.7
(3)
A 		4.8
(0.5)
A 		4.5
(0.3)
A 		5.5
(1.1)
A 		0.6
(-3)
A 		5
(0.7)
A 		7
C 9.3
(3)
A 		4.8
(-0.2)
A 		7.6
(1.8)
A 		5.7
(0.4)
A 		0.9
(-3)
A 		8.8
(2.6)
A 		8
avr 7.7
(3) 		3.6
(-0.6) 		4.4
(0.1) 		5.1
(0.7) 		0.8
(-3) 		6.5
(2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186710_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4674
Sequence Type Exemplar sequence
Representative Public ID C24H12.11 NCBI
Target Description C24H12.11 /REP_DB=WormBase Gene ID /WP=CE08365 /TR=O17163 /GB=AAB71207.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061333(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061333 NCBI Caenorhabditis elegans C24H12.11 (C24H12.11) mRNA, complete cds. 11/11 None
GENEFINDER00000023840 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:427602:429151:-1 11/11 None
C24H12.11 ENSEMBL cdna:known chromosome:CEL140:II:427602:429151:-1 gene:C24H12.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023829 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:427601-429151(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24H12.11
Entrez Gene 182873 Entrez gene
SwissProt O17163 EMBL-EBI
WormBase CE08365 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71207 Hypothetical protein C24H12.11 [Caenorhabditis elegans] ref|NP_493734.1| C24H12.11 [Caenorhabditis elegans] 1.0E-180
blast AAB71207 Hypothetical protein C24H12.11 [Caenorhabditis elegans] ref|NP_493734.1| C24H12.11 [Caenorhabditis elegans] 1.0E-178
blast AAB71199 Hypothetical protein C24H12.1 [Caenorhabditis elegans] ref|NP_493736.1| C24H12.1 [Caenorhabditis elegans] 2.0E-99
blast AAB71199 Hypothetical protein C24H12.1 [Caenorhabditis elegans] ref|NP_493736.1| C24H12.1 [Caenorhabditis elegans] 4.0E-97
blast NP_493754 T27A1.3 [Caenorhabditis elegans] gb|AAB71044.1| Hypothetical protein T27A1.3 [Caenorhabditis elegans] 4.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.8E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493734.1 1 5-22
C24H12.11 1 5-22
GENEFINDER00000023840 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:186710_AT
gtgagcaaatttccagttatccctttcaaaacttctcaagaattaacacatctcttggat
attttaaataattcctttttaatcgatcatgtcaatttagctattgatcatgatcaactc
tttgggaattttcaatccgcattgagccacccattatttcggaaatgtaatttcgtcaaa
cttcttggagatgattcgtttatttccacagaggatatagaatttatattgaagaatttc
gatttgaaatatggatttttgacccgctgtctatataaaatggagtttaacaataaactg
ctgttcaatattcctcgattggatctaaacagagattcagtaacattggacgatttgaaa
atgatgaactgtgaaaagattcgactatttaattgtatgttcatggcaaaacaactcagc
gacgatgatctggaattcgtggattgttcaaaagggcgagatatcgaaagaagtgatggt
ctacttgcaacaatactatgcgcatccgataccatgcacttcctagtatggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGCAAATTTCCAGTTATCCCTT 107 483 436 Antisense
GTTATCCCTTTCAAAACTTCTCAAG 546 447 451 Antisense
TGATCATGATCAACTCTTTGGGAAT 272 565 540 Antisense
CTTTGGGAATTTTCAATCCGCATTG 307 217 555 Antisense
AATGTAATTTCGTCAAACTTCTTGG 645 163 599 Antisense
ATGATTCGTTTATTTCCACAGAGGA 172 47 626 Antisense
AATATGGATTTTTGACCCGCTGTCT 375 173 683 Antisense
TAAACTGCTGTTCAATATTCCTCGA 296 641 729 Antisense
ATGGCAAAACAACTCAGCGACGATG 314 51 838 Antisense
AATACTATGCGCATCCGATACCATG 59 173 927 Antisense
GATACCATGCACTTCCTAGTATGGC 94 425 943 Antisense
Sequence Source Affymetrix Proprietary Database