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[186709_at]

Description Y111B2A.21 /REP_DB=WormBase Gene ID /WP=CE23261 /TR=Q9NEL0 /GB=CAC35850.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 51      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 50.4
(-0.9)
A 		107.1
(3)
P 		58.2
(-0.4)
A 		20.6
(-3)
A 		87
B 50.4
(-3)
M 		64.5
(3)
M 		60.1
(1.1)
P 		53.3
(-1.8)
M 		14
C 65.2
(3)
P 		57.5
(1)
A 		48.6
(-1.2)
A 		41.6
(-3)
A 		24
avr 55.3
(-0.3) 		76.4
(3) 		55.6
(-0.3) 		38.5
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 50.5
(-1)
A 		40
(-2.2)
P 		58
(-0.1)
M 		32.6
(-3)
A 		85.8
(3)
P 		63.6
(0.5)
A 		53
B 41.1
(-2.1)
A 		62.9
(2.7)
P 		64.4
(3)
A 		41.4
(-2.1)
A 		62.9
(2.7)
A 		37.2
(-3)
P 		27
C 57.2
(0.5)
P 		73.4
(2.1)
P 		32.7
(-1.9)
A 		51.8
(0)
A 		82.2
(3)
P 		21.1
(-3)
A 		61
avr 49.6
(-1.5) 		58.8
(-0) 		51.7
(-1.2) 		41.9
(-2.8) 		77
(3) 		40.6
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 18.4
(1.6)
A 		23.2
(3)
P 		15.2
(0.6)
A 		3
(-3)
A 		20
B 16.1
(3)
M 		15.9
(2.7)
M 		13.9
(0.2)
P 		11.4
(-3)
M 		5
C 21.6
(3)
P 		16.5
(0.9)
A 		16.9
(1.1)
A 		7
(-3)
A 		15
avr 18.7
(3) 		18.5
(2.9) 		15.3
(1.2) 		7.1
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 9.3
(-2.7)
A 		14.2
(-1)
P 		12.6
(-1.5)
M 		8.3
(-3)
A 		25.9
(3)
P 		15.5
(-0.5)
A 		18
B 14.3
(-1.6)
A 		20.9
(1.1)
P 		15.6
(-1.1)
A 		11
(-3)
A 		25.6
(3)
A 		13.9
(-1.8)
P 		15
C 21.2
(1.3)
P 		22.4
(1.7)
P 		8.3
(-2.6)
A 		10.4
(-2)
A 		26.6
(3)
P 		7.1
(-3)
A 		20
avr 14.9
(-1.1) 		19.2
(0.5) 		12.2
(-2.1) 		9.9
(-3) 		26
(3) 		12.2
(-2.1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186709_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8061
Sequence Type Exemplar sequence
Representative Public ID Y111B2A.21 NCBI
Target Description Y111B2A.21 /REP_DB=WormBase Gene ID /WP=CE23261 /TR=Q9NEL0 /GB=CAC35850.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067254(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067254 NCBI Caenorhabditis elegans Y111B2A.21 (Y111B2A.21) mRNA, complete cds. 11/11 None
SNAP00000006174 ENSEMBL cdna:SNAP chromosome:CEL140:III:12744315:12747481:1 9/11 None
GENEFINDER00000006275 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12746324:12747169:1 11/11 None
Y111B2A.21 ENSEMBL cdna:known chromosome:CEL140:III:12746324:12747481:1 gene:Y111B2A.21 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12746319-12747477(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y111B2A.21
Entrez Gene 190953 Entrez gene
SwissProt Q9NEL0 EMBL-EBI
WormBase CE23261 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35850 Hypothetical protein Y111B2A.21 [Caenorhabditis elegans] ref|NP_499655.1| Y111B2A.21 [Caenorhabditis elegans] 1.0E-120
blast CAC35850 Hypothetical protein Y111B2A.21 [Caenorhabditis elegans] ref|NP_499655.1| Y111B2A.21 [Caenorhabditis elegans] 1.0E-109
blast CAC35850 Hypothetical protein Y111B2A.21 [Caenorhabditis elegans] ref|NP_499655.1| Y111B2A.21 [Caenorhabditis elegans] 2.0E-91
blast CAD31697 Hypothetical protein Y54G11A.14 [Caenorhabditis elegans] ref|NP_741059.1| Y54G11A.14 [Caenorhabditis elegans] 4.0E-23
blast CAD31697 Hypothetical protein Y54G11A.14 [Caenorhabditis elegans] ref|NP_741059.1| Y54G11A.14 [Caenorhabditis elegans] 4.0E-17
blast CAB61086 Hypothetical protein Y53F4B.16 [Caenorhabditis elegans] ref|NP_497101.1| Y53F4B.16 [Caenorhabditis elegans] 1.0E-14
blast CAD31697 Hypothetical protein Y54G11A.14 [Caenorhabditis elegans] ref|NP_741059.1| Y54G11A.14 [Caenorhabditis elegans] 1.0E-14
blast CAB61086 Hypothetical protein Y53F4B.16 [Caenorhabditis elegans] ref|NP_497101.1| Y53F4B.16 [Caenorhabditis elegans] 3.0E-13
Sequence
Target Sequence 
>C. ELEGANS:186709_AT
tcgaccttctgtcttctcaaatcaaaagagaagttgaagaggaggatgatcgcaacgatg
agactggaccccgttcggagcccgtggatgttaagccgtctccaaaacgcccaacgaaga
ggtcagccgagacctggacgacggctcggcgccaagcaagaaacggtctacggcgggaga
cggttcaactcatcgattcgcgtataatcgaagatttcgaaataatccagtatcttccga
tgcccttcaggacttcgattcccatgaagctagtgatcttcgcagtgagaagtgaagaat
ctgccgagaagatccgctcgttaatcgatccttcgatgtggatcgcggcttttggtggcg
gaaccgaaactcaaaaattcttgtggagcgagctgacggtggaggatttcgtcaaggcac
acataatggccagcagcgcaaccgatgacgtgccatatgaggcagccatggcggatcgag
aatcgctcaaacaagctgtaaatgatgccagctctctgaaaggcttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGACCTTCTGTCTTCTCAAATCAA 221 603 140 Antisense
GATCGCAACGATGAGACTGGACCCC 414 417 187 Antisense
GTTCGGAGCCCGTGGATGTTAAGCC 139 441 212 Antisense
AACGCCCAACGAAGAGGTCAGCCGA 270 145 245 Antisense
GGTCAGCCGAGACCTGGACGACGGC 504 503 260 Antisense
GACGGTTCAACTCATCGATTCGCGT 355 377 318 Antisense
AATAATCCAGTATCTTCCGATGCCC 627 171 360 Antisense
AGATCCGCTCGTTAATCGATCCTTC 52 67 449 Antisense
TGGATCGCGGCTTTTGGTGGCGGAA 379 549 478 Antisense
GGCAGCCATGGCGGATCGAGAATCG 153 537 600 Antisense
GATGCCAGCTCTCTGAAAGGCTTGA 510 415 643 Antisense
Sequence Source Affymetrix Proprietary Database