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[186708_at]

Description F45C12.10 /REP_DB=WormBase Gene ID /WP=CE10454 /TR=O16737 /GB=AAB66209.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 30.5
(-3)
A 		41.9
(-1)
A 		42.3
(-1)
A 		65.5
(3)
A 		35
B 47.7
(-0.4)
A 		39.3
(-3)
A 		46.8
(-0.6)
A 		58.4
(3)
A 		19
C 33.4
(-0.5)
A 		60.2
(2.4)
A 		10.2
(-3)
A 		66
(3)
A 		56
avr 37.2
(-2.2) 		47.1
(-0.2) 		33.1
(-3) 		63.3
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 21
(-0.2)
A 		37
(3)
A 		31.3
(1.9)
A 		6.8
(-3)
A 		7.3
(-2.9)
A 		12.3
(-1.9)
A 		30
B 35.4
(-3)
A 		36.7
(-1.6)
A 		37.5
(-0.7)
A 		36.1
(-2.2)
A 		40
(2.1)
A 		40.8
(3)
A 		5
C 21.2
(-3)
A 		30.1
(-0.3)
A 		39.6
(2.6)
A 		40.8
(3)
A 		29
(-0.6)
A 		31.3
(0.1)
A 		20
avr 25.9
(-2.7) 		34.6
(2.2) 		36.1
(3) 		27.9
(-1.6) 		25.4
(-3) 		28.1
(-1.5) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11.1
(3)
A 		9.1
(-3)
A 		11
(2.7)
A 		9.6
(-1.5)
A 		2
B 15.2
(3)
A 		9.7
(-3)
A 		10.8
(-1.8)
A 		12.4
(-0.1)
A 		6
C 11.1
(0.3)
A 		17.3
(3)
A 		3.6
(-3)
A 		11.1
(0.3)
A 		14
avr 12.5
(3) 		12
(2.3) 		8.5
(-3) 		11
(0.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.9
(-1.9)
A 		13.2
(3)
A 		6.8
(-0.3)
A 		1.7
(-3)
A 		2.2
(-2.7)
A 		3
(-2.3)
A 		12
B 12.3
(-0.3)
A 		12.2
(-0.4)
A 		9.1
(-3)
A 		9.6
(-2.6)
A 		16.3
(3)
A 		15.2
(2.1)
A 		7
C 7.9
(-3)
A 		9.2
(-0)
A 		10.1
(2.1)
A 		8.2
(-2.3)
A 		9.4
(0.5)
A 		10.5
(3)
A 		3
avr 8
(-1.2) 		11.5
(3) 		8.7
(-0.4) 		6.5
(-3) 		9.3
(0.4) 		9.6
(0.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186708_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5053
Sequence Type Exemplar sequence
Representative Public ID F45C12.10 NCBI
Target Description F45C12.10 /REP_DB=WormBase Gene ID /WP=CE10454 /TR=O16737 /GB=AAB66209.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061649(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061649 NCBI Caenorhabditis elegans F45C12.10 (F45C12.10) mRNA, complete cds. 11/11 None
F45C12.10 ENSEMBL cdna:known chromosome:CEL140:II:1706738:1707695:1 gene:F45C12.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033184 5/11 Cross Hyb Matching Probes None
GENEFINDER00000033208 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1706710-1707722(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45C12.10
Entrez Gene 185772 Entrez gene
SwissProt O16737 EMBL-EBI
WormBase CE35931 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66209 Hypothetical protein F45C12.10 [Caenorhabditis elegans] ref|NP_494050.2| F45C12.10 [Caenorhabditis elegans] 7.0E-63
blast AAB70964 Hypothetical protein C08E3.3 [Caenorhabditis elegans] ref|NP_494007.1| C08E3.3 [Caenorhabditis elegans] 5.0E-28
blast AAB66200 Hypothetical protein F45C12.11 [Caenorhabditis elegans] ref|NP_494049.1| F45C12.11 [Caenorhabditis elegans] 3.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 7.3E-23
Sequence
Target Sequence 
>C. ELEGANS:186708_AT
gatcaagcttgcgcgcgaaggaacccaactacatgtattcttcagttttctagcctcacg
tacaactgaccaatctgtacacatacaattcagtaccaagttgatgagacccactggtga
aagcatatcgcaaagctcagaagtttgcttgctgggcggcgagagacagaaatacggctt
cggattttgttttccatgggagaaattggtgaaggagcttgtagttgaggattgtttggt
tgttgaagtttgcgcgcacatcctcgacactagtgggttcgagaagaaggagaagctccg
caactttgatgaatctatgaaggagttttcggatgttgtgctggtggtgaaggatgttaa
gttttacgtgcttaaaacgcctagacgaacttcattcgcgaacgtcaacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAAGCTTGCGCGCGAAGGAACC 86 423 87 Antisense
GGAACCCAACTACATGTATTCTTCA 37 531 106 Antisense
TGTATTCTTCAGTTTTCTAGCCTCA 238 561 120 Antisense
TTTTCTAGCCTCACGTACAACTGAC 296 675 132 Antisense
CAACTGACCAATCTGTACACATACA 443 187 149 Antisense
GTACCAAGTTGATGAGACCCACTGG 195 457 179 Antisense
TTTGCTTGCTGGGCGGCGAGAGACA 479 667 230 Antisense
GGTTGTTGAAGTTTGCGCGCACATC 492 507 324 Antisense
GCACATCCTCGACACTAGTGGGTTC 592 315 342 Antisense
GGAGAAGCTCCGCAACTTTGATGAA 581 517 375 Antisense
GAACTTCATTCGCGAACGTCAACGT 297 347 473 Antisense
Sequence Source Affymetrix Proprietary Database