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[186707_at]

Description ZK1248.13 /REP_DB=WormBase Gene ID /WP=CE02897 /TR=Q23423 /GB=AAC71094.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 85      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_total > 76      4grp_total > 29      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 145
(2.5)
P 		123.6
(0.7)
P 		79
(-3)
P 		151
(3)
P 		72
B 134.2
(3)
P 		102.7
(0.2)
P 		66.7
(-3)
P 		98.2
(-0.2)
P 		68
C 174.1
(0.2)
P 		135.4
(-2.8)
P 		132.7
(-3)
P 		211.1
(3)
P 		78
avr 151.1
(2.8) 		120.6
(-0.2) 		92.8
(-3) 		153.4
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 68.8
(-3)
A 		132.9
(0.3)
P 		152.4
(1.3)
P 		185.9
(3)
P 		136.4
(0.5)
P 		158.8
(1.6)
P 		117
B 108.3
(-3)
P 		125
(-1.2)
P 		117.6
(-2)
P 		129.6
(-0.7)
P 		121.9
(-1.6)
P 		165
(3)
P 		57
C 107.1
(-2.1)
P 		136.3
(-0.3)
P 		160
(1.1)
P 		93.1
(-3)
P 		142.4
(0)
P 		190.2
(3)
P 		97
avr 94.7
(-3) 		131.4
(-0.1) 		143.3
(0.8) 		136.2
(0.3) 		133.6
(0) 		171.3
(3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 52.8
(3)
P 		26.8
(-1.9)
P 		20.7
(-3)
P 		22.1
(-2.7)
P 		32
B 42.8
(3)
P 		25.4
(-0.8)
P 		15.5
(-3)
P 		20.9
(-1.8)
P 		27
C 57.6
(3)
P 		38.9
(-2.1)
P 		46.2
(-0.1)
P 		35.6
(-3)
P 		22
avr 51.1
(3) 		30.4
(-2) 		27.5
(-2.7) 		26.2
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 12.7
(-3)
A 		47.3
(3)
P 		33.2
(0.6)
P 		47.2
(3)
P 		41.2
(1.9)
P 		38.7
(1.5)
P 		35
B 37.7
(-1.3)
P 		41.6
(-0.6)
P 		28.6
(-3)
P 		34.3
(-2)
P 		49.5
(0.8)
P 		61.5
(3)
P 		33
C 39.7
(-0.2)
P 		41.6
(0.1)
P 		40.7
(-0.1)
P 		18.7
(-3)
P 		46.1
(0.7)
P 		63.7
(3)
P 		45
avr 30
(-3) 		43.5
(0.3) 		34.2
(-2) 		33.4
(-2.2) 		45.6
(0.8) 		54.6
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186707_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5429
Sequence Type Exemplar sequence
Representative Public ID ZK1248.13 NCBI
Target Description ZK1248.13 /REP_DB=WormBase Gene ID /WP=CE02897 /TR=Q23423 /GB=AAC71094.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062757(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062757 NCBI Caenorhabditis elegans ZK1248.13 (ZK1248.13) mRNA, complete cds. 11/11 A 
SNAP00000041378 ENSEMBL cdna:SNAP chromosome:CEL140:II:5828756:5833197:-1 11/11 None
GENEFINDER00000041397 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5831992:5833197:-1 11/11 None
ZK1248.13 ENSEMBL cdna:known chromosome:CEL140:II:5828689:5833197:-1 gene:ZK1248.13 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5831988-5833194(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1248.13
Entrez Gene 173988 Entrez gene
SwissProt Q23421 EMBL-EBI
WormBase CE33497 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71093 Hypothetical protein ZK1248.13 [Caenorhabditis elegans] ref|NP_495158.2| ZK1248.13 [Caenorhabditis elegans] 0.0
blast T34495 hypothetical protein ZK1248.13 - Caenorhabditis elegans 0.0
blast CAE59202 Hypothetical protein CBG02513 [Caenorhabditis briggsae] 1.0E-132
blast CAE59202 Hypothetical protein CBG02513 [Caenorhabditis briggsae] 1.0E-131
Sequence
Target Sequence 
>C. ELEGANS:186707_AT
tcgtgtgtcgatgcctctatacagattgacgtctggtggtcttgaagtgaactcggatta
ttattttccaatggaatctccgtatgcgaatattcaaaaatcttatctacgaacactggc
cgaccacctcactcgaactcatcggaagcttaacgaaatatgtgaatttgtggagagatg
tgaagaacacagtcaactgatgcttccgacactgattactgtactctgtgattgggtgaa
acaatttcttagagatcacgcttgtcatctcgacgaacttcgtgctgagcgactggaaga
tcctttacagacattggctcgactaaataaaaatatggaagaggtggaaatagtgagagc
agtgattggcgatgatgttggaagacatatttggttatgggaagatattgaaaactcttg
gaatcgtgtattcctgttaacacaaatggatgccatcgcaaagaagagggatgttgtcaa
gttgttacaaaataaatggattcgcgctttgttgtcaattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTGTGTCGATGCCTCTATACAGA 624 605 396 Antisense
GATTGACGTCTGGTGGTCTTGAAGT 8 435 419 Antisense
TTTCCAATGGAATCTCCGTATGCGA 47 665 460 Antisense
TCTTATCTACGAACACTGGCCGACC 694 613 496 Antisense
ACCTCACTCGAACTCATCGGAAGCT 619 87 521 Antisense
AACTGATGCTTCCGACACTGATTAC 116 143 590 Antisense
GATTACTGTACTCTGTGATTGGGTG 590 429 609 Antisense
TAGAGATCACGCTTGTCATCTCGAC 396 653 645 Antisense
CGACGAACTTCGTGCTGAGCGACTG 477 249 666 Antisense
GATCCTTTACAGACATTGGCTCGAC 167 417 694 Antisense
GGATTCGCGCTTTGTTGTCAATTAT 402 509 893 Antisense
Sequence Source Affymetrix Proprietary Database