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[186705_at]

Description K11H3.2 /REP_DB=WormBase Gene ID /WP=CE00262 /TR=SW:P34518 /GB=CAA80175.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 20      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 76.3
(-0.5)
A 		57.1
(-3)
A 		77.9
(-0.2)
A 		102.3
(3)
P 		45
B 61.7
(0.1)
A 		66
(0.6)
A 		35.8
(-3)
A 		86.3
(3)
P 		51
C 57.8
(-0.6)
A 		70.6
(0.7)
A 		35.1
(-3)
A 		92.7
(3)
P 		58
avr 65.3
(-0.9) 		64.6
(-1) 		49.6
(-3) 		93.8
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 91.8
(-0.3)
A 		41.2
(-3)
A 		74
(-1.2)
A 		64.9
(-1.7)
A 		153.6
(3)
A 		114.2
(0.9)
P 		112
B 77.2
(-2.5)
A 		71.4
(-3)
A 		92.2
(-1.1)
A 		73.7
(-2.8)
A 		131.8
(2.6)
A 		136.1
(3)
P 		65
C 75.1
(-1.9)
A 		80.2
(-1.5)
A 		59.6
(-3)
A 		116.8
(1.1)
A 		126.5
(1.8)
A 		144
(3)
P 		84
avr 81.4
(-1.6) 		64.3
(-3) 		75.3
(-2.1) 		85.1
(-1.3) 		137.3
(3) 		131.4
(2.5) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 27.8
(3)
A 		12.4
(-3)
A 		20.4
(0.1)
A 		15
(-2)
P 		15
B 19.7
(3)
A 		16.3
(1.2)
A 		8.3
(-3)
A 		18.4
(2.3)
P 		11
C 19.1
(2.1)
A 		20.3
(3)
A 		12.2
(-3)
A 		15.6
(-0.5)
P 		8
avr 22.2
(3) 		16.3
(-1.1) 		13.6
(-3) 		16.3
(-1.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 16.9
(-2.6)
A 		14.6
(-3)
A 		16.1
(-2.7)
A 		16.4
(-2.7)
A 		46.4
(3)
A 		27.8
(-0.5)
P 		32
B 26.8
(-1.7)
A 		23.8
(-2.2)
A 		22.4
(-2.5)
A 		19.5
(-3)
A 		53.6
(3)
A 		50.7
(2.5)
P 		34
C 27.8
(-0.7)
A 		24.5
(-1.3)
A 		15.2
(-3)
A 		23.5
(-1.5)
A 		40.9
(1.7)
A 		48.2
(3)
P 		33
avr 23.8
(-1.8) 		21
(-2.4) 		17.9
(-3) 		19.8
(-2.6) 		47
(3) 		42.2
(2) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186705_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8014
Sequence Type Exemplar sequence
Representative Public ID K11H3.2 NCBI
Target Description K11H3.2 /REP_DB=WormBase Gene ID /WP=CE00262 /TR=SW:P34518 /GB=CAA80175.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066785(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066785 NCBI Caenorhabditis elegans K11H3.2 (K11H3.2) mRNA, complete cds. 11/11 None
SNAP00000008459 ENSEMBL cdna:SNAP chromosome:CEL140:III:9846352:9847461:1 10/11 None
GENEFINDER00000008465 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9846352:9847461:1 10/11 None
K11H3.2 ENSEMBL cdna:known chromosome:CEL140:III:9846352:9847415:1 gene:K11H3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9846347-9847411(+) 98.54 100.0
Public Domain and Genome References
Gene Title
Ensembl K11H3.2
Entrez Gene 187306 Entrez gene
SwissProt P34518 EMBL-EBI
WormBase CE00262 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80175 Hypothetical protein K11H3.2 [Caenorhabditis elegans] ref|NP_499186.1| K11H3.2 [Caenorhabditis elegans] sp|P34518|YM42_CAEEL Hypothetical protein K11H3.2 in chromosome III 1.0E-115
blast CAA80175 Hypothetical protein K11H3.2 [Caenorhabditis elegans] ref|NP_499186.1| K11H3.2 [Caenorhabditis elegans] sp|P34518|YM42_CAEEL Hypothetical protein K11H3.2 in chromosome III 1.0E-95
blast CAE65101 Hypothetical protein CBG09962 [Caenorhabditis briggsae] 2.0E-39
blast CAE65101 Hypothetical protein CBG09962 [Caenorhabditis briggsae] 5.0E-24
Sequence
Target Sequence 
>C. ELEGANS:186705_AT
caatctcaacatcgttcagcttctcctggtgcattgaaagatccgaaactttgtgcaatt
tacaaaatgattctacaaaattcggctctacttttaatcgaaaaatctggtgtaaaaact
gtggaagagtttcaaaaagtattcggaccaattattgaagaacagaaaaacaaagaagat
gagattatcgaatttgaggaattcgaggaaattgagaaagcccgagcagaactagcttct
ccaacttcatttacaaaatattcgatgatgctcgacgagccattgtctgcgtctcctttc
aatcgtcgccgaacctctttgttctcggatcttcatgtactgtcaccaattgcttcagca
tctagtgaatcttttgagaaacctaaaagatttgcttcgtccactcaacacgctaaaaaa
tcttttgtcacagtggaatctactagaactccgtggagaagatcaaactcgatgtatctg
gaagatgtgctcaacagaacaattaatacgcttcttcctcccactgaagtcccacagtgc
ttcaagactgaatcatttgacaccatcacctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATCTCAACATCGTTCAGCTTCTC 457 181 91 Antisense
TCAGCTTCTCCTGGTGCATTGAAAG 294 625 106 Antisense
AAGCCCGAGCAGAACTAGCTTCTCC 661 149 308 Antisense
TAGCTTCTCCAACTTCATTTACAAA 308 651 323 Antisense
TGCTCGACGAGCCATTGTCTGCGTC 543 579 359 Antisense
TGTTCTCGGATCTTCATGTACTGTC 262 563 410 Antisense
GTACTGTCACCAATTGCTTCAGCAT 278 459 427 Antisense
CTTCGTCCACTCAACACGCTAAAAA 653 219 485 Antisense
GAACAATTAATACGCTTCTTCCTCC 529 353 587 Antisense
GAAGTCCCACAGTGCTTCAAGACTG 592 335 616 Antisense
TGAATCATTTGACACCATCACCTCG 415 575 639 Antisense
Sequence Source Affymetrix Proprietary Database