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[186703_at]

Description F16G10.14 /REP_DB=WormBase Gene ID /WP=CE19402 /TR=O76598 /GB=AAC26281.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 2
(-3)
A 		15.2
(1.2)
A 		20.7
(3)
A 		7.5
(-1.2)
A 		19
B 18.6
(3)
A 		2
(-3)
A 		5.7
(-1.7)
A 		4
(-2.3)
A 		17
C 14.6
(-1.6)
A 		4.9
(-2.8)
A 		3.5
(-3)
A 		52.5
(3)
A 		49
avr 11.7
(-1.1) 		7.4
(-3) 		10
(-1.9) 		21.3
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 8.9
(-0.8)
A 		4.4
(-2.1)
A 		2.1
(-2.8)
A 		5.7
(-1.7)
A 		21.4
(3)
A 		1.4
(-3)
A 		20
B 3.9
(-3)
A 		4.3
(-2.7)
A 		7.3
(-0.5)
A 		8.7
(0.5)
A 		12.2
(3)
A 		5.1
(-2.1)
A 		8
C 3.9
(-2.9)
A 		6.3
(-2.5)
A 		39.4
(3)
A 		5.1
(-2.7)
A 		3.5
(-3)
A 		3.4
(-3)
A 		36
avr 5.6
(-1.9) 		5
(-2.2) 		16.3
(3) 		6.5
(-1.5) 		12.4
(1.2) 		3.3
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.7
(-3)
A 		3.3
(0.3)
A 		5.4
(3)
A 		1.1
(-2.5)
A 		5
B 5.9
(3)
A 		0.5
(-3)
A 		1.3
(-2.1)
A 		0.8
(-2.7)
A 		5
C 4.8
(-0.2)
A 		1.4
(-2.8)
A 		1.2
(-3)
A 		8.9
(3)
A 		8
avr 3.8
(3) 		1.7
(-3) 		2.6
(-0.4) 		3.6
(2.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.6
(-1.7)
A 		1.6
(-1.7)
A 		0.5
(-2.8)
A 		1.4
(-1.9)
A 		6.5
(3)
A 		0.3
(-3)
A 		6
B 1.3
(-3)
A 		1.4
(-2.8)
A 		1.8
(-2.2)
A 		2.3
(-1.3)
A 		4.9
(3)
A 		1.9
(-2)
A 		4
C 1.4
(-2.7)
A 		1.9
(-2.4)
A 		10
(3)
A 		1
(-3)
A 		1.1
(-2.9)
A 		1.1
(-2.9)
A 		9
avr 1.4
(-2.4) 		1.6
(-2) 		4.1
(2.8) 		1.6
(-2) 		4.2
(3) 		1.1
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186703_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5096
Sequence Type Exemplar sequence
Representative Public ID F16G10.14 NCBI
Target Description F16G10.14 /REP_DB=WormBase Gene ID /WP=CE19402 /TR=O76598 /GB=AAC26281.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061866(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061866 NCBI Caenorhabditis elegans F16G10.14 (F16G10.14) mRNA, complete cds. 11/11 None
F16G10.14 ENSEMBL cdna:known chromosome:CEL140:II:2397202:2398985:-1 gene:F16G10.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023125 6/11 Cross Hyb Matching Probes None
SNAP00000023126 4/11 Cross Hyb Matching Probes None
GENEFINDER00000023131 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2397200-2398984(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16G10.14
Entrez Gene 184587 Entrez gene
SwissProt O76598 EMBL-EBI
WormBase CE19402 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26281 Hypothetical protein F16G10.14 [Caenorhabditis elegans] ref|NP_494267.1| F16G10.14 [Caenorhabditis elegans] 0.0
blast AAC26279 Hypothetical protein F16G10.11 [Caenorhabditis elegans] ref|NP_494265.1| F16G10.11 [Caenorhabditis elegans] 3.0E-61
blast AAA80368 Hypothetical protein F47B7.4 [Caenorhabditis elegans] ref|NP_508649.2| F47B7.4 [Caenorhabditis elegans] 3.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 2.5E-79
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 1.5E-59
Sequence
Target Sequence 
>C. ELEGANS:186703_AT
agtggtactgttgttctattctcgaatgaaaagttccaggcaattcgagcaccattgtca
tcggatgatttaaatggcataactataaatgattactatggacttttatgtgaaaacaat
aagttgacggcctcgaaatatccacgtggaatttttattggtttctcgcttgtgggcgat
gatggctcattgaatgggaaaaaaggacccatcgcaactttgtatgaagaagtatgccga
actatgacaaacacgtgtccagatttatcaataacggttgaacctccaatgatgattgaa
gatgtggacggctgcttaatgttttcttgcgccgcaaacgaactgccagttgctactggt
gtatttgcaggaagtgaactaacagatgttccagcacctcctggatatgctcgattttca
atcgtacctccattgtcagcggcagatttaaatgatggcatcgtaaatgattactttggg
ctcttatgtgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGGTACTGTTGTTCTATTCTCGA 265 59 445 Antisense
AAGTTCCAGGCAATTCGAGCACCAT 554 155 475 Antisense
ATTCGAGCACCATTGTCATCGGATG 286 9 487 Antisense
CGCTTGTGGGCGATGATGGCTCATT 483 253 611 Antisense
AACGGTTGAACCTCCAATGATGATT 522 143 717 Antisense
ACGGCTGCTTAATGTTTTCTTGCGC 182 95 752 Antisense
CGCCGCAAACGAACTGCCAGTTGCT 612 255 774 Antisense
ACCTCCTGGATATGCTCGATTTTCA 159 89 840 Antisense
GATTTTCAATCGTACCTCCATTGTC 7 429 857 Antisense
CCTCCATTGTCAGCGGCAGATTTAA 361 267 871 Antisense
TGATTACTTTGGGCTCTTATGTGAA 387 563 912 Antisense
Sequence Source Affymetrix Proprietary Database