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[186702_at]

Description C35D10.12 /REP_DB=WormBase Gene ID /WP=CE01193 /TR=Q18489 /GB=AAA62568.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 70      6grp_total > 07      4grp_total > 39      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 617
1 2 3 4 range
A 570
(3)
P 		236
(-1.6)
P 		135.2
(-3)
P 		245.8
(-1.5)
P 		435
B 721.3
(3)
P 		255.2
(-1.7)
P 		131.8
(-3)
P 		267.7
(-1.6)
P 		590
C 568.9
(3)
P 		225
(-1.4)
P 		104.6
(-3)
P 		274.3
(-0.8)
P 		464
avr 620.1
(3) 		238.7
(-1.6) 		123.9
(-3) 		262.6
(-1.3) 		496

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 366
1 2 3 4 5 6 range
A 434.4
(3)
P 		358.8
(1.1)
P 		271.9
(-1.2)
P 		212.6
(-2.7)
P 		199.9
(-3)
P 		206.1
(-2.8)
P 		235
B 507
(3)
P 		305.4
(-0.7)
P 		253.3
(-1.7)
P 		270.5
(-1.4)
P 		198.9
(-2.7)
P 		183.6
(-3)
P 		323
C 461
(3)
P 		336.4
(0.7)
P 		276.7
(-0.5)
P 		228.3
(-1.4)
P 		140.7
(-3)
P 		150.3
(-2.8)
P 		320
avr 467.5
(3) 		333.5
(0.2) 		267.3
(-1.2) 		237.1
(-1.8) 		179.8
(-3) 		180
(-3) 		288
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 207.5
(3)
P 		51.2
(-2.4)
P 		35.3
(-3)
P 		36
(-3)
P 		172
B 230
(3)
P 		63
(-2)
P 		30.5
(-3)
P 		57
(-2.2)
P 		200
C 188.3
(3)
P 		64.7
(-1.9)
P 		36.5
(-3)
P 		46.3
(-2.6)
P 		152
avr 208.6
(3) 		59.6
(-2.1) 		34.1
(-3) 		46.4
(-2.6) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 80.1
(-0.7)
P 		127.6
(3)
P 		59.2
(-2.3)
P 		53.9
(-2.7)
P 		60.3
(-2.2)
P 		50.2
(-3)
P 		77
B 176.4
(3)
P 		101.7
(-0.9)
P 		61.5
(-3)
P 		71.7
(-2.5)
P 		80.8
(-2)
P 		68.5
(-2.6)
P 		115
C 170.9
(3)
P 		102.7
(-0.3)
P 		70.4
(-1.8)
P 		45.9
(-3)
P 		45.5
(-3)
P 		50.3
(-2.8)
P 		125
avr 142.5
(3) 		110.7
(0.8) 		63.7
(-2.5) 		57.2
(-2.9) 		62.2
(-2.6) 		56.3
(-3) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186702_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7778
Sequence Type Exemplar sequence
Representative Public ID C35D10.12 NCBI
Target Description C35D10.12 /REP_DB=WormBase Gene ID /WP=CE01193 /TR=Q18489 /GB=AAA62568.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065617(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065617 NCBI Caenorhabditis elegans C35D10.12 (C35D10.12) mRNA, complete cds. 11/11 None
SNAP00000029552 ENSEMBL cdna:SNAP chromosome:CEL140:III:4872528:4874712:-1 11/11 None
GENEFINDER00000029560 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4872528:4874712:-1 11/11 None
C35D10.12 ENSEMBL cdna:known chromosome:CEL140:III:4872528:4874712:-1 gene:C35D10.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4872527-4874712(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35D10.12
Entrez Gene 183240 Entrez gene
SwissProt Q18489 EMBL-EBI
WormBase CE01193 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498018 C35D10.12 [Caenorhabditis elegans] gb|AAA62568.1| Hypothetical protein C35D10.12 [Caenorhabditis elegans] 0.0
blast CAE71101 Hypothetical protein CBG17953 [Caenorhabditis briggsae] 0.0
blast AAH89264 Unknown (protein for MGC:85113) [Xenopus laevis] 3.0E-39
Sequence
Target Sequence 
>C. ELEGANS:186702_AT
atctccgatggatcgataccccaaaaatggttttcgggagttttgagcaaagtagtatcc
cttactgaccagcttccgtacttttcaaaacgctgtccaaattcacctgcatacagtaac
caaagtactcctactggatccttatcctctccaatggttcaaaaacttccatcagctgct
ccacaattccttcctacaaccaactcattaatttctggaataaaacgatggagtccgatg
cttggacgacgtttagcttcactgttagttccagttgaagagcaatttggggaagaattg
gcacaaactataatgcgagaaagtattactgaagcaatggctactttgagagaggtcaca
ttctaccgcttctatcatgttttcaaagacggtgaacttgccgatttagtagattccgtg
gagagtctaaaagtcgtctcagcaacttttgaacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCCGATGGATCGATACCCCAAA 34 23 601 Antisense
AAAGTAGTATCCCTTACTGACCAGC 623 119 649 Antisense
AGCTTCCGTACTTTTCAAAACGCTG 665 65 671 Antisense
CAAAACGCTGTCCAAATTCACCTGC 593 189 686 Antisense
AAGTACTCCTACTGGATCCTTATCC 293 155 723 Antisense
GTTCAAAAACTTCCATCAGCTGCTC 311 445 757 Antisense
CCTTCCTACAACCAACTCATTAATT 235 269 789 Antisense
GACGACGTTTAGCTTCACTGTTAGT 245 375 845 Antisense
TGAGAGAGGTCACATTCTACCGCTT 179 569 947 Antisense
TCTACCGCTTCTATCATGTTTTCAA 68 615 962 Antisense
AGTCGTCTCAGCAACTTTTGAACAT 410 59 1032 Antisense
Sequence Source Affymetrix Proprietary Database