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[186701_at]

Description Y111B2A.22 /REP_DB=WormBase Gene ID /WP=CE26634 /TR=Q9NEL2 /GB=CAC35851.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 39      6grp_cgc > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 82.1
(3)
A 		59.6
(0.7)
A 		66.2
(1.4)
A 		23.1
(-3)
A 		59
B 98.7
(3)
A 		24
(-2.8)
A 		21.9
(-3)
A 		74.6
(1.1)
A 		77
C 110.8
(3)
A 		77.9
(-1.4)
A 		66
(-3)
A 		94.7
(0.8)
A 		45
avr 97.2
(3) 		53.8
(-2.7) 		51.4
(-3) 		64.1
(-1.3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 67.3
(3)
A 		19.1
(-1.7)
A 		6.4
(-3)
A 		6.2
(-3)
A 		37.8
(0.1)
A 		60.6
(2.3)
A 		61
B 35.6
(-0.5)
A 		76.4
(3)
A 		9.5
(-2.7)
A 		37
(-0.4)
A 		6
(-3)
A 		34.4
(-0.6)
A 		70
C 25.3
(0.8)
A 		21.7
(-0)
A 		16.4
(-1.2)
A 		35
(3)
A 		8.6
(-3)
A 		28.2
(1.5)
A 		26
avr 42.7
(3) 		39.1
(2.3) 		10.8
(-3) 		26.1
(-0.1) 		17.5
(-1.7) 		41.1
(2.7) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 29.9
(3)
A 		12.9
(-0.8)
A 		17.3
(0.1)
A 		3.4
(-3)
A 		27
B 31.5
(3)
A 		5.9
(-2.8)
A 		5.1
(-3)
A 		15.9
(-0.5)
A 		26
C 36.7
(3)
A 		22.4
(-1.1)
A 		23
(-1)
A 		16
(-3)
A 		21
avr 32.7
(3) 		13.7
(-2.5) 		15.1
(-2.1) 		11.8
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 12.4
(2)
A 		6.8
(-0.6)
A 		1.4
(-3)
A 		1.6
(-2.9)
A 		11.4
(1.5)
A 		14.7
(3)
A 		13
B 12.4
(-0.4)
A 		25.4
(3)
A 		2.3
(-3)
A 		9.8
(-1.1)
A 		2.4
(-3)
A 		12.8
(-0.3)
A 		23
C 9.4
(3)
A 		6.6
(0.5)
A 		4.2
(-1.7)
A 		7
(0.8)
A 		2.8
(-3)
A 		9.4
(3)
A 		7
avr 11.4
(2.1) 		12.9
(3) 		2.6
(-3) 		6.1
(-1) 		5.5
(-1.3) 		12.3
(2.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186701_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7964
Sequence Type Exemplar sequence
Representative Public ID Y111B2A.22 NCBI
Target Description Y111B2A.22 /REP_DB=WormBase Gene ID /WP=CE26634 /TR=Q9NEL2 /GB=CAC35851.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067253(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067253 NCBI Caenorhabditis elegans yeast Swi2/Snf2-Like family member (ssl-1) (ssl-1) mRNA, complete cds. 11/11 None
SNAP00000006173 ENSEMBL cdna:SNAP chromosome:CEL140:III:12728615:12743802:1 11/11 None
GENEFINDER00000006276 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12731287:12743802:1 11/11 None
Y111B2A.22 ENSEMBL cdna:known chromosome:CEL140:III:12714441:12743802:1 gene:Y111B2A.22 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12733963-12743798(+) 95.14 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ssl-1
Ensembl Y111B2A.22
Entrez Gene 190954 Entrez gene
SwissProt Q9NEL2 EMBL-EBI
WormBase CE36671 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1633331_AT domino dm
DROSOPHILA_2:1636034_AT domino dm
DROSOPHILA_2:1628160_A_AT domino dm
DROSGENOME1:151511_R_AT domino dm
DROSGENOME1:142280_AT domino dm
YEAST_2:1780193_AT Swi2/Snf2-related ATPase, component of the SWR1 complex; required for the incorporation of Htz1p into chromatin Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
4386 helicase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8026 ATP-dependent helicase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC35851 Hypothetical protein Y111B2A.22 [Caenorhabditis elegans] ref|NP_499654.2| yeast Swi2/Snf2-Like family member (ssl-1) [Caenorhabditis elegans] 0.0
blast AAS65429 Swi/Snf family ATPase [Caenorhabditis elegans] 0.0
blast CAE57522 Hypothetical protein CBG00497 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000330 EMBL-EBI SNF2 related domain 3.5E-114
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 4.6E-28
Sequence
Target Sequence 
>C. ELEGANS:186701_AT
accgtcatccatatccaatgtcgtcaaatgttgtgccagtacgtgttctaccagccacgc
aacaaggacaacaacgaatgatgacaggacaacgtcgtccggctccagcgcccggtactg
tcgccgcaatggtgttgccgaatcgaggagctggtggaattccgcaaatgcgcagtttgc
aacgaggcagttacaccggcggtggtggtcagcaacgaatcaacgtgatggttcaaccac
aacaaatgcgcagcaacaatggcggtggagtcggtggccaaggaggcctccagggtggtc
caggaggtccgcaaggaattcgtcggccactcgtcggacggccactacaacgaggagtcg
ataatcaggcgccgacggttgctcaggtcgttgttgctccgccgcaaggaatgcagcagg
catcacaaggaccacccgtacttcatatgcagagagcggtttccatgcaaatgccgacga
gtcatcatcatcaaggccaacagcaggctcctccgcagagctcacagcaggcttcgcaac
aggctcccacatcggattctggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGTCATCCATATCCAATGTCGTC 335 89 1772 Antisense
TGTTGTGCCAGTACGTGTTCTACCA 540 563 1800 Antisense
ATGACAGGACAACGTCGTCCGGCTC 24 45 1852 Antisense
GTCGCCGCAATGGTGTTGCCGAATC 244 475 1891 Antisense
GGTCCGCAAGGAATTCGTCGGCCAC 419 501 2077 Antisense
GATAATCAGGCGCCGACGGTTGCTC 215 421 2131 Antisense
TGCAGCAGGCATCACAAGGACCACC 621 577 2183 Antisense
CCACCCGTACTTCATATGCAGAGAG 519 271 2203 Antisense
GCGGTTTCCATGCAAATGCCGACGA 184 293 2227 Antisense
GAGTCATCATCATCAAGGCCAACAG 531 399 2250 Antisense
CAGGCTCCCACATCGGATTCTGGGA 489 207 2311 Antisense
Sequence Source Affymetrix Proprietary Database