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[186700_at]

Description F08D12.11 /REP_DB=WormBase Gene ID /WP=CE09244 /TR=P91234 /GB=AAB37934.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 5.9
(1.7)
A 		3.1
(-3)
A 		6.7
(3)
A 		4.9
(0)
A 		4
B 6
(-2.5)
A 		5.6
(-3)
A 		6.7
(-1.6)
A 		10.3
(3)
A 		5
C 4.1
(-0.8)
A 		3.1
(-3)
A 		4
(-1)
A 		5.8
(3)
A 		3
avr 5.3
(-0.3) 		3.9
(-3) 		5.8
(0.7) 		7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 11.8
(3)
A 		7.6
(0.4)
A 		3.8
(-1.9)
A 		2
(-3)
A 		9.1
(1.3)
A 		3.1
(-2.3)
A 		10
B 4.3
(-0.5)
A 		2.2
(-2.9)
A 		2.1
(-3)
A 		6.6
(2.2)
A 		7.3
(3)
A 		5.5
(0.9)
A 		5
C 2
(-2.9)
A 		13.4
(1.5)
A 		8.6
(-0.3)
A 		17.1
(3)
A 		1.8
(-3)
A 		2.8
(-2.6)
A 		15
avr 6
(-0.3) 		7.7
(1.9) 		4.8
(-1.8) 		8.6
(3) 		6.1
(-0.1) 		3.8
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.1
(3)
A 		0.7
(-3)
A 		1.7
(1.3)
A 		0.7
(-3)
A 		1
B 1.9
(0.7)
A 		1.4
(-3)
A 		1.6
(-1.5)
A 		2.2
(3)
A 		1
C 1.4
(3)
A 		0.9
(-3)
A 		1.4
(3)
A 		1
(-1.8)
A 		0
avr 1.8
(3) 		1
(-3) 		1.6
(1.5) 		1.3
(-0.8) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 2.2
(1.6)
A 		2.7
(3)
A 		0.8
(-2.2)
A 		0.5
(-3)
A 		2.7
(3)
A 		0.8
(-2.2)
A 		2
B 1.5
(-0.6)
A 		0.7
(-2.5)
A 		0.5
(-3)
A 		1.8
(0.1)
A 		3
(3)
A 		2.1
(0.8)
A 		3
C 0.7
(-2.8)
A 		4.1
(3)
A 		2.2
(-0.3)
A 		3.4
(1.8)
A 		0.6
(-3)
A 		0.9
(-2.5)
A 		4
avr 1.5
(-1.6) 		2.5
(3) 		1.2
(-3) 		1.9
(0.2) 		2.1
(1.2) 		1.3
(-2.5) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186700_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5432
Sequence Type Exemplar sequence
Representative Public ID F08D12.11 NCBI
Target Description F08D12.11 /REP_DB=WormBase Gene ID /WP=CE09244 /TR=P91234 /GB=AAB37934.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061959(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061959 NCBI Caenorhabditis elegans F08D12.11 (F08D12.11) mRNA, complete cds. 11/11 None
SNAP00000023716 ENSEMBL cdna:SNAP chromosome:CEL140:II:2773996:2774941:-1 11/11 None
GENEFINDER00000023728 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2773996:2775004:-1 11/11 None
F08D12.11 ENSEMBL cdna:known chromosome:CEL140:II:2773996:2775004:-1 gene:F08D12.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2773994-2775003(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08D12.11
Entrez Gene 173623 Entrez gene
SwissProt P91234 EMBL-EBI
WormBase CE09244 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37934 Hypothetical protein F08D12.11 [Caenorhabditis elegans] ref|NP_494360.1| F08D12.11 [Caenorhabditis elegans] 0.0
blast AAB37934 Hypothetical protein F08D12.11 [Caenorhabditis elegans] ref|NP_494360.1| F08D12.11 [Caenorhabditis elegans] 1.0E-172
blast AAB37931 Hypothetical protein F08D12.9 [Caenorhabditis elegans] ref|NP_494358.1| F08D12.9 [Caenorhabditis elegans] 8.0E-52
blast AAB37930 Hypothetical protein F08D12.10 [Caenorhabditis elegans] ref|NP_494359.1| F08D12.10 [Caenorhabditis elegans] 8.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.5E-4
Sequence
Target Sequence 
>C. ELEGANS:186700_AT
tggaaatcttcaatcactcggccattgacatgtttcgcatagtaggttcccgccacgccg
aatcatatctgaaaaggatacataaaactacagatggcctggaagtaggtaccatggaat
tcgtgtactggacggaagaaagagtgcacttcatgagaagaaccttccagcctacagatg
tatcactcacatttcctgatgaagagaatttcacgccaaagtctacacagaggattctcc
tggaaaaccagcacttcttgatgtatcgctgggcggattcggagccacgtttcactttga
acgatctcctagcgatcaactgctcccaactctttataccagagtccacattaaccgcca
aggacctaaacatatttctcaagcactggatcatcggattcattggaaatctcaatatgg
ttcaattgaagaagcatgacgggagaatgtggagtttggaagccgtgctgaacgatattg
attacacaatatcagccgaattggccgaagatatacagacagtagtaatcccacgataca
gactgtcagaattgtttctgacctacacgacacctccgaatatgggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAAATCTTCAATCACTCGGCCAT 656 547 350 Antisense
ACTCGGCCATTGACATGTTTCGCAT 268 99 365 Antisense
ATGTTTCGCATAGTAGGTTCCCGCC 69 47 379 Antisense
GAACCTTCCAGCCTACAGATGTATC 587 345 509 Antisense
GAATTTCACGCCAAAGTCTACACAG 281 325 555 Antisense
AAACCAGCACTTCTTGATGTATCGC 503 125 594 Antisense
TGTATCGCTGGGCGGATTCGGAGCC 70 559 611 Antisense
GTTTCACTTTGAACGATCTCCTAGC 461 449 638 Antisense
TATACCAGAGTCCACATTAACCGCC 22 639 684 Antisense
GAATTGTTTCTGACCTACACGACAC 585 323 898 Antisense
CTACACGACACCTCCGAATATGGGC 7 223 912 Antisense
Sequence Source Affymetrix Proprietary Database