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[186699_at]

Description F16G10.15 /REP_DB=WormBase Gene ID /WP=CE19403 /TR=O76600 /GB=AAC26283.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 22.4
(-0.6)
A 		12.7
(-3)
A 		18.1
(-1.7)
A 		36.9
(3)
A 		24
B 42.7
(3)
A 		33.5
(1.5)
A 		6
(-3)
A 		24.4
(0)
A 		37
C 42.2
(0.4)
M 		44.7
(1.5)
A 		34.6
(-3)
A 		48.2
(3)
A 		14
avr 35.8
(2.8) 		30.3
(0.8) 		19.6
(-3) 		36.5
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 2.6
(-2.9)
A 		9
(-1.8)
A 		19.5
(-0)
A 		2.1
(-3)
A 		37
(3)
A 		34.7
(2.6)
A 		35
B 12.3
(-3)
A 		26.8
(-0.2)
A 		42.9
(3)
A 		35.3
(1.5)
A 		18.7
(-1.7)
A 		31.4
(0.7)
A 		31
C 15.7
(-0.9)
A 		4.8
(-2.8)
A 		38
(3)
A 		3.5
(-3)
A 		7.5
(-2.3)
A 		14.7
(-1.1)
A 		35
avr 10.2
(-3) 		13.5
(-2.2) 		33.5
(3) 		13.6
(-2.1) 		21.1
(-0.2) 		26.9
(1.3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8.1
(3)
A 		2.8
(-3)
A 		4.7
(-0.8)
A 		5.4
(-0.1)
A 		5
B 13.6
(3)
A 		8.3
(0.4)
A 		1.4
(-3)
A 		5.2
(-1.1)
A 		12
C 14
(3)
M 		12.8
(1.8)
A 		12.1
(1.1)
A 		8.1
(-3)
A 		6
avr 11.9
(3) 		8
(-1) 		6.1
(-3) 		6.2
(-2.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.5
(-3)
A 		3.2
(-1.5)
A 		4.2
(-0.9)
A 		0.5
(-3)
A 		11.2
(3)
A 		8.5
(1.5)
A 		11
B 4.3
(-3)
A 		8.9
(0.7)
A 		10.4
(1.9)
A 		9.4
(1.1)
A 		7.6
(-0.3)
A 		11.7
(3)
A 		7
C 5.8
(0.4)
A 		1.5
(-2.5)
A 		9.7
(3)
A 		0.7
(-3)
A 		2.4
(-1.9)
A 		4.9
(-0.2)
A 		9
avr 3.5
(-3) 		4.5
(-1.8) 		8.1
(2.6) 		3.5
(-3) 		7.1
(1.4) 		8.4
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186699_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5469
Sequence Type Exemplar sequence
Representative Public ID F16G10.15 NCBI
Target Description F16G10.15 /REP_DB=WormBase Gene ID /WP=CE19403 /TR=O76600 /GB=AAC26283.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061868(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061868 NCBI Caenorhabditis elegans F16G10.15 (F16G10.15) mRNA, complete cds. 11/11 None
F16G10.15 ENSEMBL cdna:known chromosome:CEL140:II:2405258:2407682:-1 gene:F16G10.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023129 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2405256-2407681(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16G10.15
Entrez Gene 184588 Entrez gene
SwissProt O76600 EMBL-EBI
WormBase CE19403 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26283 Hypothetical protein F16G10.15 [Caenorhabditis elegans] ref|NP_494269.1| F16G10.15 [Caenorhabditis elegans] 0.0
blast AAB70354 Hypothetical protein F42G2.2 [Caenorhabditis elegans] ref|NP_494273.1| F42G2.2 [Caenorhabditis elegans] 1.0E-117
blast AAT48620 Hypothetical protein F42G2.4a [Caenorhabditis elegans] ref|NP_494270.3| F42G2.4a [Caenorhabditis elegans] 1.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.5E-28
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.2E-35
Sequence
Target Sequence 
>C. ELEGANS:186699_AT
gaaacggtgacgcaaatactccaatacttgggccccgtttcactgaaagctattaacttt
gcattttcggacggcacgccgacaagagacgtgcggagcattaaaacactatccagcatg
aaacattggaaaaacgcagaaaaattgcatatccactcgcttgtggtgaaatgcgatgtt
gtggatttagttcattttacaaaagtcgacatagtactggactcgatatcattgggagat
gttgtatatttgaaagatacattcctcttatctcaaacattccgtcaatttaaagccgag
tttgtgaacagtgatattaatgaatccatattcgatgatactttcttgggagatccgttc
cgcagaatttccgatctttcgactggacaacctaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACGGTGACGCAAATACTCCAAT 445 357 1180 Antisense
CAAATACTCCAATACTTGGGCCCCG 639 191 1192 Antisense
GGCCCCGTTTCACTGAAAGCTATTA 537 541 1210 Antisense
AACTTTGCATTTTCGGACGGCACGC 502 135 1234 Antisense
GGACGGCACGCCGACAAGAGACGTG 311 525 1248 Antisense
AAAAATTGCATATCCACTCGCTTGT 631 129 1319 Antisense
AGTACTGGACTCGATATCATTGGGA 244 63 1392 Antisense
ACATTCCTCTTATCTCAAACATTCC 451 105 1438 Antisense
TTTCTTGGGAGATCCGTTCCGCAGA 465 669 1521 Antisense
TTCCGCAGAATTTCCGATCTTTCGA 52 699 1537 Antisense
CGATCTTTCGACTGGACAACCTAAT 349 243 1551 Antisense
Sequence Source Affymetrix Proprietary Database