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[186698_s_at]

Description C17G10.4C /REP_DB=WormBase Gene ID /WP=CE08288 /TR=P81300 /GB=AAB93458.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_total > 27      4grp_total > 39      6grp_cgc > 05      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 479.7
(3)
P 		249.6
(-3)
P 		277.2
(-2.3)
P 		286.3
(-2)
P 		230
B 373.3
(3)
P 		337.3
(0.7)
P 		278.4
(-3)
P 		299.2
(-1.7)
P 		95
C 468.6
(3)
P 		312.6
(-2.2)
P 		287.7
(-3)
P 		363.7
(-0.5)
P 		181
avr 440.5
(3) 		299.8
(-2.3) 		281.1
(-3) 		316.4
(-1.7) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 380.7
(3)
P 		266.6
(0.6)
P 		99.9
(-3)
A 		127.9
(-2.4)
M 		155.8
(-1.8)
P 		255.8
(0.3)
P 		281
B 350.7
(3)
P 		267.2
(0.9)
P 		118.1
(-2.8)
P 		111.5
(-3)
A 		167.1
(-1.6)
P 		227.7
(-0.1)
P 		239
C 320.6
(3)
P 		201.6
(-1.4)
P 		204.6
(-1.3)
P 		173.8
(-2.4)
A 		157.9
(-3)
P 		204.5
(-1.3)
P 		163
avr 350.7
(3) 		245.1
(0) 		140.9
(-2.9) 		137.7
(-3) 		160.3
(-2.4) 		229.3
(-0.4) 		213
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 174.7
(3)
P 		54.2
(-2.4)
P 		72.5
(-1.6)
P 		41.9
(-3)
P 		133
B 119
(3)
P 		83.3
(-0.9)
P 		64.5
(-2.9)
P 		63.8
(-3)
P 		55
C 155.1
(3)
P 		89.9
(-1.2)
P 		100.3
(-0.5)
P 		61.3
(-3)
P 		94
avr 149.6
(3) 		75.8
(-1.7) 		79.1
(-1.5) 		55.7
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 70.2
(1)
P 		94.8
(3)
P 		21.7
(-3)
A 		32.4
(-2.1)
M 		47
(-0.9)
P 		62.3
(0.3)
P 		73
B 122
(3)
P 		88.9
(0.9)
P 		28.7
(-3)
P 		29.5
(-2.9)
A 		67.9
(-0.5)
P 		84.9
(0.6)
P 		93
C 118.8
(3)
P 		61.5
(-1.1)
P 		52.1
(-1.8)
P 		34.9
(-3)
A 		51.1
(-1.8)
P 		68.5
(-0.6)
P 		84
avr 103.7
(3) 		81.7
(1.2) 		34.2
(-2.8) 		32.3
(-3) 		55.3
(-1.1) 		71.9
(0.3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186698_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5900
Sequence Type Exemplar sequence
Representative Public ID C17G10.4C NCBI
Target Description C17G10.4C /REP_DB=WormBase Gene ID /WP=CE08288 /TR=P81300 /GB=AAB93458.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062683(11), NM_062685(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062683 NCBI Caenorhabditis elegans Cell Division Cycle related family member (cdc-14) (cdc-14) mRNA, complete cds. 11/11 A 
NM_062685 NCBI Caenorhabditis elegans Cell Division Cycle related family member (cdc-14) (cdc-14) mRNA, complete cds. 11/11 None
SNAP00000029021 ENSEMBL cdna:SNAP chromosome:CEL140:II:5590351:5593343:-1 11/11 None
GENEFINDER00000029033 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5589534:5593343:-1 11/11 None
C17G10.4b ENSEMBL cdna:known chromosome:CEL140:II:5587609:5593343:-1 gene:C17G10.4 11/11 A 
C17G10.4c.1 ENSEMBL cdna:known chromosome:CEL140:II:5589179:5593395:-1 gene:C17G10.4 11/11 None
C17G10.4c.2 ENSEMBL cdna:known chromosome:CEL140:II:5589179:5593397:-1 gene:C17G10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173945 5 2 NM_001026798 173747_at (11), 186610_s_at (10)
NM_062683 186608_s_at (11), 186698_s_at (11)
NM_062684 186610_s_at (10)
NM_062685 174820_s_at (11), 186698_s_at (11)
NM_170993 173747_at (11), 186610_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5590348-5593341(-) 100.0 100.0
Public Domain and Genome References
Ensembl C17G10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT74543 CDC-14 phosphatase isoform B [Caenorhabditis elegans] gb|AAB93459.1| Cell division cycle related protein 14, isoform b [Caenorhabditis elegans] ref|NP_495084.3| Cell Division Cycle related family member (cdc-14) [Caenorhabditis elegans] sp|P81299|CDC14_CAEEL Probable tyrosine-protein phosphatase cdc-14 (Cell division cycle-related protein 14) pir||T34097 probable protein-tyrosine-phosphatase (EC 3.1.3.48) CDC14 - Caenorhabditis elegans 0.0
blast CAE59147 Hypothetical protein CBG02452 [Caenorhabditis briggsae] 0.0
blast AAT74544 CDC-14 phosphatase isoform C [Caenorhabditis elegans] gb|AAB93458.1| Cell division cycle related protein 14, isoform c [Caenorhabditis elegans] ref|NP_495086.1| Cell Division Cycle related family member (cdc-14) [Caenorhabditis elegans] gb|AAB94407.1| protein phosphatase CDC14 [Caenorhabditis elegans] pir||E88158 protein C17G10.4c [imported] - Caenorhabditis elegans 0.0
blast AAT74542 CDC-14 phosphatase isoform A [Caenorhabditis elegans] gb|AAM54205.1| Cell division cycle related protein 14, isoform a [Caenorhabditis elegans] ref|NP_495085.2| Cell Division Cycle related family member (cdc-14) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006612 EMBL-EBI Zinc-finger protein of unknown function DM3 2.4E-21
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.2E-15
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.2E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029033 1 762-784
Sequence
Target Sequence 
>C. ELEGANS:186698_S_AT
agccttcaaccacagtttggtcttgttcgagtgcctcctgattcaccgcatagtataatg
gctcatcgtccaccaccgacaacgtcgtctcgagctccactttctccacataactattca
acaactcaaggatattcgacatcgtctcgtggattatacggagacaagaaaccattggca
cgtggatcggtttccacttcaacattaccgtcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCTTCAACCACAGTTTGGTCTTG 226 81 1813 Antisense
CAGTTTGGTCTTGTTCGAGTGCCTC 426 205 1825 Antisense
TCCTGATTCACCGCATAGTATAATG 396 593 1848 Antisense
TAGTATAATGGCTCATCGTCCACCA 467 653 1863 Antisense
CCACTTTCTCCACATAACTATTCAA 546 275 1909 Antisense
CCACATAACTATTCAACAACTCAAG 380 273 1918 Antisense
ACAACTCAAGGATATTCGACATCGT 380 111 1933 Antisense
GATATTCGACATCGTCTCGTGGATT 334 427 1943 Antisense
CGGAGACAAGAAACCATTGGCACGT 536 243 1971 Antisense
GGCACGTGGATCGGTTTCCACTTCA 408 535 1989 Antisense
TTTCCACTTCAACATTACCGTCAAT 603 665 2003 Antisense
Sequence Source Affymetrix Proprietary Database