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[186697_at]

Description C48B4.6 /REP_DB=WormBase Gene ID /WP=CE00482 /TR=SW:P34360 /GB=CAA82378.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 15      6grp_total > 96      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 814
1 2 3 4 range
A 144.8
(-3)
P 		200.7
(-2.6)
P 		344.2
(-1.5)
P 		932.4
(3)
P 		788
B 126.2
(-3)
A 		188.6
(-2.5)
P 		366.5
(-1.2)
P 		930.2
(3)
P 		804
C 118.2
(-3)
P 		235.6
(-2)
P 		284.8
(-1.5)
P 		797.9
(3)
P 		680
avr 129.7
(-3) 		208.3
(-2.4) 		331.8
(-1.4) 		886.8
(3) 		757

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1819
1 2 3 4 5 6 range
A 124.6
(-3)
A 		190.2
(-2.8)
P 		342.1
(-2.3)
P 		823.5
(-0.7)
P 		1273.3
(0.8)
P 		1943.5
(3)
P 		1819
B 134.6
(-3)
M 		241.8
(-2.6)
P 		331.8
(-2.3)
P 		797.1
(-0.7)
P 		1228.8
(0.7)
P 		1889
(3)
P 		1754
C 127.3
(-3)
A 		251.5
(-2.4)
P 		457.6
(-1.4)
P 		691.5
(-0.2)
P 		1103.1
(1.8)
P 		1343.3
(3)
P 		1216
avr 128.8
(-3) 		227.8
(-2.6) 		377.2
(-2.1) 		770.7
(-0.6) 		1201.7
(1) 		1725.3
(3) 		1597
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 52.7
(-2.4)
P 		43.6
(-3)
P 		90
(-0)
P 		136.5
(3)
P 		93
B 40.3
(-3)
A 		46.6
(-2.8)
P 		84.9
(-1.3)
P 		198.2
(3)
P 		158
C 39.1
(-3)
P 		67.7
(-1.2)
P 		99.3
(0.8)
P 		134.5
(3)
P 		95
avr 44
(-3) 		52.6
(-2.5) 		91.4
(-0.5) 		156.4
(3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 681
1 2 3 4 5 6 range
A 23
(-3)
A 		67.6
(-2.4)
P 		74.5
(-2.3)
P 		208.9
(-0.5)
P 		384.2
(1.8)
P 		473.2
(3)
P 		450
B 46.8
(-3)
M 		80.5
(-2.7)
P 		80.6
(-2.7)
P 		211.1
(-1.5)
P 		499.2
(1.1)
P 		704.4
(3)
P 		658
C 47.2
(-3)
A 		76.7
(-2.6)
P 		116.5
(-2)
P 		139.1
(-1.6)
P 		356.9
(1.6)
P 		449.7
(3)
P 		403
avr 39
(-3) 		74.9
(-2.6) 		90.5
(-2.4) 		186.4
(-1.2) 		413.4
(1.5) 		542.4
(3) 		503
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186697_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7323
Sequence Type Exemplar sequence
Representative Public ID C48B4.6 NCBI
Target Description C48B4.6 /REP_DB=WormBase Gene ID /WP=CE00482 /TR=SW:P34360 /GB=CAA82378.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066708(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066708 NCBI Caenorhabditis elegans C48B4.6 (C48B4.6) mRNA, complete cds. 11/11 None
SNAP00000040758 ENSEMBL cdna:SNAP chromosome:CEL140:III:9557456:9558447:-1 11/11 None
GENEFINDER00000040781 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9557456:9558447:-1 11/11 None
C48B4.6 ENSEMBL cdna:known chromosome:CEL140:III:9557456:9558447:-1 gene:C48B4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9557451-9558443(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C48B4.6
Entrez Gene 183566 Entrez gene
SwissProt P34360 EMBL-EBI
WormBase CE00482 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82378 Hypothetical protein C48B4.6 [Caenorhabditis elegans] ref|NP_499109.1| C48B4.6 [Caenorhabditis elegans] sp|P34360|YLH6_CAEEL Hypothetical protein C48B4.6 in chromosome III 4.0E-98
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499109.1 4 17-36,51-70,75-97,117-139
C48B4.6 4 17-36,51-70,75-97,117-139
SNAP00000040758 4 17-36,51-70,75-97,117-139
GENEFINDER00000040781 4 17-36,51-70,75-97,117-139
Sequence
Target Sequence 
>C. ELEGANS:186697_AT
gttcattcaagctctttttctcatcggacttgttgaagatctctgctattaccatatgtt
ctatagcagacaatatttcttcctcgaaatcctcgtgacaattcacaccggattttcgtt
catcgtgttcctcattgagcacaagcctctcatcatgctccatgtcggttacatgactct
tctgaccatcattccgattgcttatatggtcatgcagggtgttgagtttggaatcctcat
cttcgatgactatcacattctcgttttccgcgattttcataagtttggatgttccatcat
gttctccctatactacattggatacattgtcgtgtgcttcctgttcatcgaagctctcga
aaagaaaccagttctcccacaggtttattcgatcaagccaaagcttgttgccgcggttaa
tcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCATTCAAGCTCTTTTTCTCATC 204 445 87 Antisense
TTCTTCCTCGAAATCCTCGTGACAA 447 689 163 Antisense
GACAATTCACACCGGATTTTCGTTC 121 365 183 Antisense
GTTCATCGTGTTCCTCATTGAGCAC 72 445 204 Antisense
CTCTCATCATGCTCCATGTCGGTTA 377 231 233 Antisense
GTCGGTTACATGACTCTTCTGACCA 83 473 250 Antisense
TTCTGACCATCATTCCGATTGCTTA 157 695 266 Antisense
GATGACTATCACATTCTCGTTTTCC 489 411 331 Antisense
TTGGATGTTCCATCATGTTCTCCCT 385 709 371 Antisense
AGTTCTCCCACAGGTTTATTCGATC 57 65 456 Antisense
CAAAGCTTGTTGCCGCGGTTAATCC 58 193 485 Antisense
Sequence Source Affymetrix Proprietary Database