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[186696_at]

Description ZK632.5 /REP_DB=WormBase Gene ID /WP=CE00422 /TR=SW:P34651 /GB=CAA80182.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 85      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 74      6grp_total > 75      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 427
1 2 3 4 range
A 662.8
(3)
P 		416.5
(-2.5)
P 		393.6
(-3)
P 		624.2
(2.1)
P 		269
B 706.1
(3)
P 		507.6
(-1.5)
P 		444
(-3)
P 		487.7
(-2)
P 		262
C 821
(3)
P 		442.1
(-2.6)
P 		417.5
(-3)
P 		585.3
(-0.5)
P 		404
avr 730
(3) 		455.4
(-2.3) 		418.4
(-3) 		565.7
(-0.2) 		312

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 447
1 2 3 4 5 6 range
A 509.4
(-3)
P 		595.8
(-1.1)
P 		677.5
(0.6)
P 		688.4
(0.9)
P 		715.3
(1.4)
P 		787.2
(3)
P 		278
B 556.3
(-3)
P 		620.6
(-1.7)
P 		774.7
(1.5)
P 		685.1
(-0.4)
P 		607.4
(-2)
P 		849.8
(3)
P 		294
C 407.1
(-3)
P 		635.3
(0.1)
P 		650.2
(0.3)
P 		730.6
(1.3)
P 		513.5
(-1.6)
P 		853.6
(3)
P 		447
avr 490.9
(-3) 		617.2
(-0.8) 		700.8
(0.7) 		701.4
(0.7) 		612.1
(-0.9) 		830.2
(3) 		339
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 241.3
(3)
P 		90.4
(-3)
P 		102.9
(-2.5)
P 		91.4
(-3)
P 		151
B 225.2
(3)
P 		125.4
(-1.9)
P 		102.9
(-3)
P 		103.9
(-3)
P 		122
C 271.8
(3)
P 		127.1
(-2)
P 		145.5
(-1.4)
P 		98.7
(-3)
P 		173
avr 246.1
(3) 		114.3
(-2.3) 		117.1
(-2.2) 		98
(-3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 93.9
(-3)
P 		211.9
(2.8)
P 		147.5
(-0.4)
P 		174.6
(1)
P 		215.9
(3)
P 		191.7
(1.8)
P 		122
B 193.6
(-2.5)
P 		206.6
(-1.9)
P 		188.1
(-2.7)
P 		181.4
(-3)
P 		246.8
(-0.1)
P 		316.9
(3)
P 		136
C 150.9
(-2.8)
P 		193.9
(-1)
P 		165.5
(-2.2)
P 		146.9
(-3)
P 		166.2
(-2.2)
P 		285.8
(3)
P 		139
avr 146.1
(-3) 		204.1
(-0.1) 		167
(-1.9) 		167.6
(-1.9) 		209.6
(0.2) 		264.8
(3) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186696_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5998
Sequence Type Exemplar sequence
Representative Public ID ZK632.5 NCBI
Target Description ZK632.5 /REP_DB=WormBase Gene ID /WP=CE00422 /TR=SW:P34651 /GB=CAA80182.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066774(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066774 NCBI Caenorhabditis elegans ZK632.5 (ZK632.5) mRNA, complete cds. 11/11 None
SNAP00000031474 ENSEMBL cdna:SNAP chromosome:CEL140:III:9808440:9812432:1 11/11 None
GENEFINDER00000031489 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9808440:9812391:1 9/11 None
ZK632.5 ENSEMBL cdna:known chromosome:CEL140:III:9808438:9812522:1 gene:ZK632.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9808435-9812428(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK632.5
Entrez Gene 176389 Entrez gene
SwissProt P34651 EMBL-EBI
WormBase CE00422 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80182 Hypothetical protein ZK632.5 [Caenorhabditis elegans] ref|NP_499175.1| ZK632.5 [Caenorhabditis elegans] sp|P34651|YOT5_CAEEL Hypothetical protein ZK632.5 in chromosome III 0.0
blast CAE65124 Hypothetical protein CBG09989 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:186696_AT
tcactccgccagaaccattaaatgtttttgtgtcgaaaagtgttactgacatttattccc
aagtgttcacagtactccgaatgcttcacacagcactcaatgaagttttggaaactcgaa
attctgagacattaactcgtgagccacgtcttcgatacgcattctttcatatgaatacta
cgatttttgcaatccgaaagaatatgctcacactcattgaacaatcatatgaggcattta
tgaaaaccttagatttcaaaagcaaacctgaccaacgaagttcgcatgaactcttaaatg
tctgttatcgtgcacatcggaaatttattcgtgacgttgctggagctttgatgctgaaat
caaatgcaggaactactggtagaatcattcgtcttatggttggaagtgtttcccaggcat
caaatgcttgtgtaaatggagatgcagtcggtgctgaaaaattctatcagcaatttcaaa
acaatctgctcatttttcttgaccaatgtcgcctcgatcatattcgttatccactgtaca
gaagtttggaaattggaagcgaagagactgatggtcgccgatctctaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACTCCGCCAGAACCATTAAATGT 105 625 1859 Antisense
GTTCACAGTACTCCGAATGCTTCAC 450 445 1923 Antisense
AACTCGTGAGCCACGTCTTCGATAC 497 139 1992 Antisense
GTCTTCGATACGCATTCTTTCATAT 240 469 2006 Antisense
GCAAACCTGACCAACGAAGTTCGCA 518 317 2120 Antisense
TGTCTGTTATCGTGCACATCGGAAA 321 557 2157 Antisense
GAAGTGTTTCCCAGGCATCAAATGC 583 335 2261 Antisense
AACAATCTGCTCATTTTTCTTGACC 251 135 2338 Antisense
TTTTCTTGACCAATGTCGCCTCGAT 314 677 2352 Antisense
GCCTCGATCATATTCGTTATCCACT 502 281 2369 Antisense
GACTGATGGTCGCCGATCTCTAAAT 523 375 2424 Antisense
Sequence Source Affymetrix Proprietary Database