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[186695_at]

Description T21D12.11 /REP_DB=WormBase Gene ID /WP=CE18274 /TR=O16783 /GB=AAC48093.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 30.4
(-1.4)
A 		27
(-1.9)
A 		18.9
(-3)
A 		63.3
(3)
A 		44
B 54.3
(3)
A 		39.1
(-1.8)
A 		35.2
(-3)
A 		46.3
(0.5)
A 		19
C 16.7
(-3)
A 		37.7
(-1.3)
A 		20.9
(-2.7)
A 		89.2
(3)
A 		73
avr 33.8
(-1.7) 		34.6
(-1.6) 		25
(-3) 		66.3
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 36.5
(-2.1)
A 		42.3
(-1.1)
A 		66.2
(3)
A 		48.7
(0)
A 		31.1
(-3)
A 		42.5
(-1.1)
A 		35
B 6.4
(-3)
A 		39.5
(1.1)
A 		27.8
(-0.3)
A 		54.4
(3)
A 		20.7
(-1.2)
A 		40.1
(1.2)
A 		48
C 37.4
(2.5)
A 		37.9
(2.6)
A 		7.5
(-3)
A 		40.1
(3)
A 		24.3
(0.1)
A 		29.9
(1.1)
A 		33
avr 26.8
(-2.6) 		39.9
(0.9) 		33.8
(-0.7) 		47.7
(3) 		25.4
(-3) 		37.5
(0.3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11.1
(3)
A 		5.9
(-2)
A 		4.9
(-3)
A 		9.3
(1.3)
A 		6
B 17.3
(3)
A 		9.7
(-2)
A 		8.1
(-3)
A 		9.9
(-1.8)
A 		9
C 5.5
(-3)
A 		10.8
(0.3)
A 		7.3
(-1.9)
A 		15
(3)
A 		10
avr 11.3
(2.9) 		8.8
(-0.4) 		6.8
(-3) 		11.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 6.7
(-3)
A 		15.1
(3)
A 		14.4
(2.5)
A 		12.4
(1.1)
A 		9.4
(-1.1)
A 		10.4
(-0.4)
A 		8
B 2.2
(-3)
A 		13.1
(2.1)
A 		6.7
(-0.9)
A 		14.4
(2.7)
A 		8.4
(-0.1)
A 		15
(3)
A 		13
C 13.9
(3)
A 		11.6
(1.9)
A 		1.9
(-3)
A 		8.1
(0.1)
A 		7.9
(0)
A 		10
(1.1)
A 		12
avr 7.6
(-3) 		13.3
(3) 		7.7
(-2.9) 		11.6
(1.2) 		8.6
(-1.9) 		11.8
(1.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186695_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10806
Sequence Type Exemplar sequence
Representative Public ID T21D12.11 NCBI
Target Description T21D12.11 /REP_DB=WormBase Gene ID /WP=CE18274 /TR=O16783 /GB=AAC48093.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067492(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067492 NCBI Caenorhabditis elegans T21D12.11 (T21D12.11) mRNA, complete cds. 11/11 None
SNAP00000019187 ENSEMBL cdna:SNAP chromosome:CEL140:IV:269350:272099:1 11/11 None
GENEFINDER00000019202 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:269350:274215:1 9/11 None
T21D12.11 ENSEMBL cdna:known chromosome:CEL140:IV:269407:272099:1 gene:T21D12.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:269406-272099(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T21D12.11
Entrez Gene 188694 Entrez gene
SwissProt O16783 EMBL-EBI
WormBase CE18274 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48093 Hypothetical protein T21D12.11 [Caenorhabditis elegans] ref|NP_499893.1| T21D12.11 [Caenorhabditis elegans] 1.0E-169
blast AAC48093 Hypothetical protein T21D12.11 [Caenorhabditis elegans] ref|NP_499893.1| T21D12.11 [Caenorhabditis elegans] 1.0E-147
blast AAC48093 Hypothetical protein T21D12.11 [Caenorhabditis elegans] ref|NP_499893.1| T21D12.11 [Caenorhabditis elegans] 1.0E-128
Sequence
Target Sequence 
>C. ELEGANS:186695_AT
acagcaacgggtgaacctgccagtacgacgatggaggcgaatgaacattcatccacgttt
gaaactgagtcttctactgtgccagctactaatgaacctataacaacgtcatttatccct
tcaactactgatctatcaattattacttcaacggaagaagcaaaaatcagcacgacaatg
gaaacagatgaactatcaaccacaacggagtcaagctactccacaactcagtttacaacc
ttcaaaatcccaacatcctcattttcgacgcttcctatggaaggaacttctacaaaggag
cagactactctgtctacagaagaaacatcttcagccacaacagcgaccatttttgaaaaa
ctttctacaactctattctttgaagaaacacaagtaacatcaacgtctgactttacatcg
tctcctagaagtattgaaacaacacgtgtcatagagttcgatacttcaacggaactgcaa
acgacttccaaaacctctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGCAACGGGTGAACCTGCCAGTA 632 107 1567 Antisense
GAAACTGAGTCTTCTACTGTGCCAG 677 357 1627 Antisense
ACTGTGCCAGCTACTAATGAACCTA 364 97 1642 Antisense
TAACAACGTCATTTATCCCTTCAAC 281 639 1667 Antisense
TATCCCTTCAACTACTGATCTATCA 330 659 1680 Antisense
TCAAGCTACTCCACAACTCAGTTTA 345 631 1777 Antisense
AAAATCCCAACATCCTCATTTTCGA 448 133 1810 Antisense
TCATTTTCGACGCTTCCTATGGAAG 42 617 1825 Antisense
TTCAGCCACAACAGCGACCATTTTT 574 685 1896 Antisense
AACGTCTGACTTTACATCGTCTCCT 178 145 1968 Antisense
TGCAAACGACTTCCAAAACCTCTAC 371 577 2042 Antisense
Sequence Source Affymetrix Proprietary Database