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[186694_s_at] --- /// --- /// --- /// ---

Description Y55H10B.2 /REP_DB=WormBase Gene ID /WP=CE22570 /TR=Q9N4R9 /GB=AAF60811.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 2.5
(-3)
A 		4.2
(-1.2)
A 		4.2
(-1.2)
A 		8.1
(3)
A 		6
B 1.9
(-3)
A 		26.7
(3)
A 		4.4
(-2.4)
A 		7.2
(-1.7)
A 		25
C 4.8
(0)
A 		4.7
(-0)
A 		1.2
(-3)
A 		8.3
(3)
A 		7
avr 3.1
(-3) 		11.9
(3) 		3.3
(-2.9) 		7.9
(0.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 2
(-2.8)
A 		1.7
(-3)
A 		10.4
(1.7)
A 		3.1
(-2.2)
A 		12.8
(3)
A 		1.7
(-3)
A 		11
B 14.4
(-0.7)
A 		3
(-2.6)
A 		35.7
(3)
A 		2.4
(-2.7)
A 		0.9
(-3)
A 		2.2
(-2.8)
A 		35
C 1.4
(-2.6)
A 		1.7
(-2)
A 		4.1
(3)
A 		2.5
(-0.3)
A 		1.2
(-3)
A 		3.2
(1.1)
A 		3
avr 5.9
(-1.4) 		2.1
(-3) 		16.7
(3) 		2.7
(-2.8) 		5
(-1.8) 		2.4
(-2.9) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.9
(-3)
A 		0.9
(-3)
A 		1.1
(1)
A 		1.2
(3)
A 		0
B 0.6
(-3)
A 		6.6
(3)
A 		1
(-2.6)
A 		1.5
(-2.1)
A 		6
C 1.6
(3)
A 		1.4
(2)
A 		0.4
(-3)
A 		1.4
(2)
A 		1
avr 1
(-2.5) 		3
(3) 		0.8
(-3) 		1.4
(-1.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.6
(-2.7)
A 		2.3
(0.3)
A 		0.8
(-2.3)
A 		3.9
(3)
A 		0.4
(-3)
A 		4
B 5
(0.3)
A 		1
(-2.6)
A 		8.7
(3)
A 		0.6
(-2.9)
A 		0.4
(-3)
A 		0.8
(-2.7)
A 		8
C 0.5
(-2.1)
A 		0.5
(-2.1)
A 		1.1
(3)
A 		0.5
(-2.1)
A 		0.4
(-3)
A 		1.1
(3)
A 		1
avr 2
(-0.5) 		0.7
(-2.8) 		4
(3) 		0.6
(-3) 		1.6
(-1.2) 		0.8
(-2.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186694_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10596
Sequence Type Exemplar sequence
Representative Public ID Y55H10B.2 NCBI
Target Description Y55H10B.2 /REP_DB=WormBase Gene ID /WP=CE22570 /TR=Q9N4R9 /GB=AAF60811.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067918(11), NM_061031(11), NM_075058(11), NM_067869(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067918 NCBI Caenorhabditis elegans Y55H10B.2 (Y55H10B.2) mRNA, complete cds. 11/11 None
NM_061031 NCBI Caenorhabditis elegans Y71A12B.7 (Y71A12B.7) mRNA, complete cds. 11/11 A 
NM_075058 NCBI Caenorhabditis elegans F57G4.2 (F57G4.2) mRNA, complete cds. 11/11 A 
NM_067869 NCBI Caenorhabditis elegans Y54G2A.21 (Y54G2A.21) mRNA, complete cds. 11/11 A 
SNAP00000038367 ENSEMBL cdna:SNAP chromosome:CEL140:I:13938164:13942592:1 11/11 None
GENEFINDER00000038392 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13938164:13942774:1 11/11 None
SNAP00000034693 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3313613:3316753:1 11/11 None
SNAP00000036503 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2904148:2908518:-1 11/11 None
GENEFINDER00000036619 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2904148:2908518:-1 11/11 None
SNAP00000009857 ENSEMBL cdna:SNAP chromosome:CEL140:V:17636442:17638746:-1 11/11 None
GENEFINDER00000009866 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17636442:17638746:-1 11/11 None
Y71A12B.7 ENSEMBL cdna:known chromosome:CEL140:I:13938164:13943022:1 gene:Y71A12B.7 11/11 A 
Y54G2A.21 ENSEMBL cdna:known chromosome:CEL140:IV:2906435:2913810:-1 gene:Y54G2A.21 11/11 A 
Y55H10B.2 ENSEMBL cdna:known chromosome:CEL140:IV:3313888:3314291:1 gene:Y55H10B.2 11/11 None
F57G4.2 ENSEMBL cdna:known chromosome:CEL140:V:17636442:17638746:-1 gene:F57G4.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034695 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title



Ensembl Y71A12B.7
Y54G2A.21
Y55H10B.2
F57G4.2
Entrez Gene 186457 Entrez gene
190282 Entrez gene
190577 Entrez gene
3564806 Entrez gene
SwissProt Q9XUX5 EMBL-EBI
Q9N3B2 EMBL-EBI
Q9N4R9 EMBL-EBI
Q9GRV3 EMBL-EBI
WormBase CE18767 Wormbase
CE36896 Wormbase
CE22570 Wormbase
CE26240 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC14422 Hypothetical protein Y71A12B.7 [Caenorhabditis elegans] ref|NP_493432.1| Y71A12B.7 [Caenorhabditis elegans] 0.0
blast CAB00875 Hypothetical protein T16A9.1 [Caenorhabditis elegans] ref|NP_506516.1| T16A9.1 [Caenorhabditis elegans] 0.0
blast AAF60812 Hypothetical protein Y55H10B.1 [Caenorhabditis elegans] ref|NP_500320.1| Y55H10B.1 [Caenorhabditis elegans] 0.0
blast CAB04507 Hypothetical protein F57G4.2 [Caenorhabditis elegans] ref|NP_507459.1| F57G4.2 [Caenorhabditis elegans] 0.0
blast AAF59577 Hypothetical protein Y54G2A.21 [Caenorhabditis elegans] ref|NP_500270.3| Y54G2A.21 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:186694_S_AT
gatcgaagacgcaaagcgcacacacggagacaggctgagctacaccgtcgctgatggagg
agtactcgacgttactttctataaatctttccctgaagcgatcaagattttcttgaaaag
ttgccctgaagaatctcgcgttaccgagtggcgtgatgaaatcgaagatatttgccaaat
ggctccacaagcacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGAAGACGCAAAGCGCACACAC 594 417 15 Antisense
GCAAAGCGCACACACGGAGACAGGC 487 317 25 Antisense
ACGGAGACAGGCTGAGCTACACCGT 4 97 38 Antisense
GCTACACCGTCGCTGATGGAGGAGT 336 303 53 Antisense
GGAGGAGTACTCGACGTTACTTTCT 536 495 70 Antisense
GTTACTTTCTATAAATCTTTCCCTG 250 447 85 Antisense
TAAATCTTTCCCTGAAGCGATCAAG 562 641 96 Antisense
GATTTTCTTGAAAAGTTGCCCTGAA 219 429 120 Antisense
AAGTTGCCCTGAAGAATCTCGCGTT 183 157 132 Antisense
GAATCTCGCGTTACCGAGTGGCGTG 89 329 145 Antisense
TTGCCAAATGGCTCCACAAGCACGA 489 701 186 Antisense
Sequence Source Affymetrix Proprietary Database