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[186693_at]

Description C40H1.2 /REP_DB=WormBase Gene ID /WP=CE00110 /TR=SW:Q03572 /GB=CAA79553.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      6grp_total > 93      4grp_total > 25      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 33.7
(-3)
A 		61.3
(0.3)
A 		73.2
(1.7)
P 		84
(3)
P 		50
B 71.7
(1)
P 		78.8
(2.4)
A 		51.4
(-3)
M 		81.6
(3)
P 		30
C 39.9
(-3)
P 		93.4
(2.3)
M 		71.4
(0.1)
A 		100.2
(3)
P 		60
avr 48.4
(-3) 		77.8
(1.4) 		65.3
(-0.5) 		88.6
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 101.7
(0.1)
P 		42
(-3)
A 		79.3
(-1)
P 		58.8
(-2.1)
P 		155.8
(3)
P 		49.8
(-2.6)
A 		114
B 45.5
(-3)
A 		65.7
(-1.5)
A 		94.5
(0.6)
P 		75.9
(-0.8)
P 		126.7
(3)
P 		55
(-2.3)
P 		81
C 17.1
(-3)
A 		57.7
(1.5)
P 		55.6
(1.2)
A 		71.8
(3)
A 		45.2
(0.1)
P 		60.1
(1.7)
M 		55
avr 54.8
(-3) 		55.1
(-3) 		76.5
(-0.6) 		68.8
(-1.5) 		109.2
(3) 		55
(-3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.3
(-3)
A 		13.3
(-2.1)
A 		19.1
(3)
P 		12.3
(-3)
P 		7
B 22.9
(3)
P 		19.5
(1.1)
A 		11.9
(-3)
M 		17.4
(-0)
P 		11
C 13.2
(-3)
P 		26.8
(3)
M 		24.9
(2.2)
A 		16.9
(-1.4)
P 		14
avr 16.1
(-2.2) 		19.9
(3) 		18.6
(1.2) 		15.5
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 18.8
(-1.8)
P 		14.9
(-2.5)
A 		17.3
(-2.1)
P 		14.9
(-2.5)
P 		47
(3)
P 		12.1
(-3)
A 		35
B 15.8
(-3)
A 		21.9
(-2)
A 		23
(-1.8)
P 		20.1
(-2.3)
P 		51.5
(3)
P 		20.5
(-2.2)
P 		36
C 6.3
(-3)
A 		17.6
(1.9)
P 		14.1
(0.4)
A 		14.4
(0.5)
A 		14.6
(0.6)
P 		20.1
(3)
M 		14
avr 13.6
(-3) 		18.1
(-1.9) 		18.1
(-1.9) 		16.5
(-2.3) 		37.7
(3) 		17.6
(-2) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186693_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6747
Sequence Type Exemplar sequence
Representative Public ID C40H1.2 NCBI
Target Description C40H1.2 /REP_DB=WormBase Gene ID /WP=CE00110 /TR=SW:Q03572 /GB=CAA79553.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066649(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066649 NCBI Caenorhabditis elegans C40H1.2 (C40H1.2) mRNA, complete cds. 11/11 None
SNAP00000000781 ENSEMBL cdna:SNAP chromosome:CEL140:III:9317494:9319170:1 9/11 None
GENEFINDER00000000796 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9317787:9319170:1 10/11 None
C40H1.2 ENSEMBL cdna:known chromosome:CEL140:III:9317943:9319170:1 gene:C40H1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026043 1/11 Cross Hyb Matching Probes None
SNAP00000000782 1/11 Cross Hyb Matching Probes None
GENEFINDER00000000793 1/11 Cross Hyb Matching Probes None
C40H1.9 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9317938-9319166(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C40H1.2
Entrez Gene 183365 Entrez gene
SwissProt Q03572 EMBL-EBI
WormBase CE00110 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE17741 Hypothetical protein C40H1.9 [Caenorhabditis elegans] ref|NP_001021214.1| C40H1.9 [Caenorhabditis elegans] 1.0E-127
blast CAA79553 Hypothetical protein C40H1.2 [Caenorhabditis elegans] ref|NP_499050.1| C40H1.2 [Caenorhabditis elegans] sp|Q03572|YLF2_CAEEL Hypothetical protein C40H1.2 in chromosome III 1.0E-125
blast CAE17741 Hypothetical protein C40H1.9 [Caenorhabditis elegans] ref|NP_001021214.1| C40H1.9 [Caenorhabditis elegans] 1.0E-109
blast CAA79553 Hypothetical protein C40H1.2 [Caenorhabditis elegans] ref|NP_499050.1| C40H1.2 [Caenorhabditis elegans] sp|Q03572|YLF2_CAEEL Hypothetical protein C40H1.2 in chromosome III 1.0E-109
blast CAE65245 Hypothetical protein CBG10128 [Caenorhabditis briggsae] 1.0E-108
blast CAA79553 Hypothetical protein C40H1.2 [Caenorhabditis elegans] ref|NP_499050.1| C40H1.2 [Caenorhabditis elegans] sp|Q03572|YLF2_CAEEL Hypothetical protein C40H1.2 in chromosome III 1.0E-107
blast CAE65245 Hypothetical protein CBG10128 [Caenorhabditis briggsae] 7.0E-97
blast CAE17741 Hypothetical protein C40H1.9 [Caenorhabditis elegans] ref|NP_001021214.1| C40H1.9 [Caenorhabditis elegans] 5.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 1.9E-6
Pfam IPR002921 EMBL-EBI Lipase, class 3 3.7E-10
Sequence
Target Sequence 
>C. ELEGANS:186693_AT
ataatctgtgcaagccgagtttcgcaccttgcactacaaaagtttcgcaaccaaattcca
acgatgaagcttcacaaagttcgaactgtgaattgttctgccgattatccagatgtggag
tgtaacggttacacagcatacgacaccgcccaaaaagtgattgtcatttcatttcgagga
accaaaggaccaaatcaaaataatcaaattgtggaaggaatgactcgagatgggcttctt
ccatactttggaaatggttccgggaaaatcttcaaagttctttacgattccttcatgctc
ctttggaacgaatggtattcgaataagttcccatcttcattccatataattcaccgattg
gacctcattcctagagttccagcaattgaccctcataccaatacaactgtgatgttccac
ccaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAATCTGTGCAAGCCGAGTTTCGC 382 25 16 Antisense
AGTTTCGCACCTTGCACTACAAAAG 702 61 33 Antisense
CGGTTACACAGCATACGACACCGCC 396 243 141 Antisense
GAATGACTCGAGATGGGCTTCTTCC 641 331 233 Antisense
AAGTTCTTTACGATTCCTTCATGCT 24 157 290 Antisense
ATTCCTTCATGCTCCTTTGGAACGA 472 7 302 Antisense
CGAATAAGTTCCCATCTTCATTCCA 251 253 335 Antisense
TCACCGATTGGACCTCATTCCTAGA 301 625 366 Antisense
AGAGTTCCAGCAATTGACCCTCATA 156 69 388 Antisense
TGACCCTCATACCAATACAACTGTG 18 569 402 Antisense
ACAACTGTGATGTTCCACCCAAGAA 348 113 418 Antisense
Sequence Source Affymetrix Proprietary Database