[Home] | [Total List]

[186692_s_at]

Description F35F10.12 /REP_DB=WormBase Gene ID /WP=CE09937 /TR=Q9GYT4 /GB=AAF99937.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 03      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_total > 24      4grp_total > 52      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 354
1 2 3 4 range
A 497.1
(3)
P 		398.2
(1.2)
P 		313.9
(-0.2)
P 		158.8
(-3)
P 		338
B 416
(1.2)
P 		512.6
(3)
P 		433.6
(1.5)
P 		193.8
(-3)
P 		319
C 437.6
(2.1)
P 		473.4
(3)
P 		379.2
(0.6)
P 		241.3
(-3)
P 		232
avr 450.2
(2.7) 		461.4
(3) 		375.6
(1) 		198
(-3) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 339
1 2 3 4 5 6 range
A 366.8
(3)
P 		334
(2)
P 		293
(0.6)
P 		178.6
(-3)
P 		216.9
(-1.8)
P 		189.6
(-2.6)
P 		188
B 461.4
(3)
P 		381.6
(1.4)
P 		326.6
(0.3)
P 		189.9
(-2.4)
P 		189.5
(-2.4)
P 		160.8
(-3)
P 		301
C 367.8
(3)
P 		282
(0.9)
P 		281
(0.9)
P 		209.9
(-0.9)
P 		227.1
(-0.4)
A 		122.2
(-3)
P 		246
avr 398.7
(3) 		332.5
(1.4) 		300.2
(0.5) 		192.8
(-2.1) 		211.2
(-1.7) 		157.5
(-3) 		241
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 181
(3)
P 		86.4
(-0.6)
P 		82.1
(-0.8)
P 		23.2
(-3)
P 		158
B 132.7
(3)
P 		126.6
(2.6)
P 		100.5
(0.9)
P 		41.3
(-3)
P 		91
C 144.8
(3)
P 		136.1
(2.5)
P 		132.1
(2.3)
P 		40.7
(-3)
P 		104
avr 152.8
(3) 		116.4
(1.1) 		104.9
(0.6) 		35.1
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 67.6
(-1.2)
P 		118.8
(3)
P 		63.8
(-1.5)
P 		45.3
(-3)
P 		65.4
(-1.4)
P 		46.2
(-2.9)
P 		74
B 160.5
(3)
P 		127
(1.2)
P 		79.3
(-1.4)
P 		50.3
(-3)
P 		77
(-1.5)
P 		60
(-2.5)
P 		110
C 136.3
(3)
P 		86
(-0.2)
P 		71.5
(-1.1)
P 		42.2
(-2.9)
P 		73.5
(-0.9)
A 		40.9
(-3)
P 		95
avr 121.5
(3) 		110.6
(2.1) 		71.5
(-1) 		45.9
(-3) 		72
(-0.9) 		49
(-2.8) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186692_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15091
Sequence Type Exemplar sequence
Representative Public ID F35F10.12 NCBI
Target Description F35F10.12 /REP_DB=WormBase Gene ID /WP=CE09937 /TR=Q9GYT4 /GB=AAF99937.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071516(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071516 NCBI Caenorhabditis elegans F35F10.12 (F35F10.12) mRNA, complete cds. 11/11 None
SNAP00000011248 ENSEMBL cdna:SNAP chromosome:CEL140:V:3313300:3315340:-1 11/11 None
GENEFINDER00000011257 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3313300:3315060:-1 11/11 None
F35F10.12.1 ENSEMBL cdna:known chromosome:CEL140:V:3313174:3315342:-1 gene:F35F10.12 11/11 None
F35F10.12.2 ENSEMBL cdna:known chromosome:CEL140:V:3313300:3315067:-1 gene:F35F10.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3313299-3315060(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35F10.12
Entrez Gene 178764 Entrez gene
SwissProt Q9GYT4 EMBL-EBI
WormBase CE09937 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
7600 sensory perception inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF99937 Hypothetical protein F35F10.12 [Caenorhabditis elegans] ref|NP_503917.1| F35F10.12 [Caenorhabditis elegans] 0.0
blast CAB05787 Hypothetical protein R06B9.3 [Caenorhabditis elegans] ref|NP_496882.1| R06B9.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 3.4E-50
Pfam IPR000698 EMBL-EBI Arrestin 4.6E-59
Pfam IPR000698 EMBL-EBI Arrestin 3.4E-50
Pfam IPR000698 EMBL-EBI Arrestin 1.5E-53
Sequence
Target Sequence 
>C. ELEGANS:186692_S_AT
ggagactagcacgacttgtgggggtaacgtcgattgtgaaatgtcaattttaattggaac
agtccctatcagcaaatatcttccaccagcctactacccacaggatccaaatcttccgcc
gagccaaccaacgccaattggaggaggagttgctccggctggagttgctccagctggagt
cgtcccaccaccaggatatggattcttaccaatgactgatggtacagacaatggagccgg
agatacaccatatccagttggtccgccttatccatctgatgtgcctgctccatatccaag
cggggatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGACTAGCACGACTTGTGGGGGT 501 519 942 Antisense
ACTTGTGGGGGTAACGTCGATTGTG 134 1 955 Antisense
GGAACAGTCCCTATCAGCAAATATC 344 529 997 Antisense
TATCAGCAAATATCTTCCACCAGCC 694 657 1008 Antisense
TACCCACAGGATCCAAATCTTCCGC 536 649 1036 Antisense
CGAGCCAACCAACGCCAATTGGAGG 164 247 1061 Antisense
GCTCCGGCTGGAGTTGCTCCAGCTG 129 299 1093 Antisense
TCGTCCCACCACCAGGATATGGATT 216 605 1121 Antisense
AGCCGGAGATACACCATATCCAGTT 257 83 1176 Antisense
GCCTTATCCATCTGATGTGCCTGCT 525 281 1206 Antisense
CCTGCTCCATATCCAAGCGGGGATG 646 265 1225 Antisense
Sequence Source Affymetrix Proprietary Database