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[186691_at]

Description T15H9.5 /REP_DB=WormBase Gene ID /WP=CE01668 /TR=SW:Q09355 /GB=CAA87418.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 7.3
(-3)
A 		7.3
(-3)
A 		36.9
(1.3)
A 		48.2
(3)
A 		41
B 3.8
(-3)
A 		9.9
(-1.7)
A 		32.9
(3)
A 		7.5
(-2.2)
A 		29
C 3.1
(-3)
A 		9
(-0.1)
A 		3.8
(-2.7)
A 		15.2
(3)
A 		12
avr 4.7
(-3) 		8.7
(-1.8) 		24.5
(3) 		23.6
(2.7) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 43.5
(1.1)
A 		33.6
(0.1)
A 		28.7
(-0.4)
A 		3.7
(-3)
A 		43.5
(1.1)
A 		61.7
(3)
A 		58
B 30.3
(-2.9)
A 		37.2
(-1.2)
A 		40.3
(-0.4)
A 		34
(-2)
A 		54.3
(3)
A 		29.9
(-3)
A 		24
C 8
(-2.4)
A 		42.1
(2.8)
A 		6.9
(-2.6)
A 		4
(-3)
A 		43.6
(3)
A 		27.8
(0.6)
A 		40
avr 27.3
(-0.6) 		37.6
(1.3) 		25.3
(-0.9) 		13.9
(-3) 		47.1
(3) 		39.8
(1.7) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.7
(-2.2)
A 		1.6
(-3)
A 		9.6
(3)
A 		7.1
(1.1)
A 		8
B 1.2
(-3)
A 		2.5
(-1.8)
A 		7.6
(3)
A 		1.6
(-2.6)
A 		6
C 1
(-3)
A 		2.6
(3)
A 		1.3
(-1.9)
A 		2.6
(3)
A 		2
avr 1.6
(-3) 		2.2
(-2.2) 		6.2
(3) 		3.8
(-0.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 8
(0)
A 		12
(1.7)
A 		6.2
(-0.7)
A 		0.9
(-3)
A 		13.1
(2.2)
A 		15
(3)
A 		14
B 10.6
(-2.3)
A 		12.4
(-1.4)
A 		9.8
(-2.6)
A 		9
(-3)
A 		22.1
(3)
A 		11.2
(-2)
A 		13
C 3
(-2)
A 		12.8
(2.4)
A 		1.8
(-2.5)
A 		0.8
(-3)
A 		14.1
(3)
A 		9.3
(0.8)
A 		13
avr 7.2
(-1.3) 		12.4
(1.1) 		5.9
(-1.9) 		3.6
(-3) 		16.4
(3) 		11.8
(0.8) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186691_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2792
Sequence Type Exemplar sequence
Representative Public ID T15H9.5 NCBI
Target Description T15H9.5 /REP_DB=WormBase Gene ID /WP=CE01668 /TR=SW:Q09355 /GB=CAA87418.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063667(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063667 NCBI Caenorhabditis elegans T15H9.5 (T15H9.5) mRNA, complete cds. 11/11 None
SNAP00000036796 ENSEMBL cdna:SNAP chromosome:CEL140:II:9610632:9614693:-1 11/11 None
GENEFINDER00000036807 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9610632:9611252:-1 11/11 None
T15H9.5 ENSEMBL cdna:known chromosome:CEL140:II:9610632:9611252:-1 gene:T15H9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9610628-9611249(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15H9.5
Entrez Gene 188541 Entrez gene
SwissProt Q09355 EMBL-EBI
WormBase CE01668 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87416 Hypothetical protein T15H9.3 [Caenorhabditis elegans] ref|NP_496070.1| Helix Loop Helix family member (hlh-6) [Caenorhabditis elegans] sp|Q10007|HLH6_CAEEL Helix-loop-helix protein 1.0E-84
blast CAA87418 Hypothetical protein T15H9.5 [Caenorhabditis elegans] ref|NP_496068.1| T15H9.5 [Caenorhabditis elegans] sp|Q09355|YRY5_CAEEL Hypothetical protein T15H9.5 in chromosome II 1.0E-50
blast CAA87418 Hypothetical protein T15H9.5 [Caenorhabditis elegans] ref|NP_496068.1| T15H9.5 [Caenorhabditis elegans] sp|Q09355|YRY5_CAEEL Hypothetical protein T15H9.5 in chromosome II 6.0E-50
blast CAE62561 Hypothetical protein CBG06671 [Caenorhabditis briggsae] 3.0E-46
blast CAB02916 Hypothetical protein F10D11.4 [Caenorhabditis elegans] ref|NP_492293.1| F10D11.4 [Caenorhabditis elegans] 4.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 4.3E-17
Sequence
Target Sequence 
>C. ELEGANS:186691_AT
ccaccagcatcgttttcagagacttcaaaagttcaaaatgtccagaacacacaaccgaaa
cctgcagcaccatcacaaatgtcgattgatgaatcccactcgaagaatcaaaaactaccg
tctgctgagaaatctgtggaagaatgtaagaagccagtttcgcctgaaaagaaaaagtcg
ccgataaaggttttgagtgagaagaaattgaaatcgaagaaaaaggaggaggacaaggaa
ccggacgaaaaagtggagaaagatgtgaaaaaggaagtcaaggctgataacaacgaacct
cttgtaaagaatctgaaaattgcgaagaaagagcaagaagaggaaaatccgaagacagac
ttggagtctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCAGCATCGTTTTCAGAGACTT 608 273 49 Antisense
AATGTCCAGAACACACAACCGAAAC 119 163 85 Antisense
CAGAACACACAACCGAAACCTGCAG 369 205 91 Antisense
GATGAATCCCACTCGAAGAATCAAA 603 411 136 Antisense
GAATCAAAAACTACCGTCTGCTGAG 405 327 153 Antisense
TACCGTCTGCTGAGAAATCTGTGGA 593 649 164 Antisense
GAATGTAAGAAGCCAGTTTCGCCTG 517 329 190 Antisense
GAAGCCAGTTTCGCCTGAAAAGAAA 399 333 198 Antisense
AAGTCGCCGATAAAGGTTTTGAGTG 451 155 223 Antisense
AAGGCTGATAACAACGAACCTCTTG 635 161 328 Antisense
AATCCGAAGACAGACTTGGAGTCTC 446 165 394 Antisense
Sequence Source Affymetrix Proprietary Database