[Home] | [Total List]

[186690_at]

Description Y54E10A.1 /REP_DB=WormBase Gene ID /WP=CE24438 /TR=Q9N3E1 /GB=AAF60760.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 56      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 87.6
(3)
A 		62.1
(-2.6)
A 		79.7
(1.3)
A 		60.3
(-3)
A 		27
B 49.9
(-3)
A 		60.1
(-1.4)
A 		88
(3)
M 		51.1
(-2.8)
A 		38
C 71.2
(-0.6)
A 		66.3
(-3)
A 		78.8
(3)
A 		67.7
(-2.3)
A 		13
avr 69.6
(-0.4) 		62.8
(-2.2) 		82.2
(3) 		59.7
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 49.4
(-1.3)
A 		38
(-2.9)
A 		66.4
(1)
A 		80.9
(3)
A 		36.9
(-3)
A 		61.2
(0.3)
A 		44
B 102.9
(3)
A 		59.5
(-2.7)
P 		81.5
(0.2)
A 		70.3
(-1.3)
A 		97.9
(2.3)
P 		56.9
(-3)
P 		46
C 82.5
(1.5)
A 		59.3
(-1.5)
A 		82.1
(1.4)
A 		47.6
(-3)
A 		94.2
(3)
A 		69.2
(-0.2)
P 		47
avr 78.3
(3) 		52.3
(-3) 		76.7
(2.6) 		66.3
(0.2) 		76.3
(2.5) 		62.4
(-0.7) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 31.9
(3)
A 		13.5
(-1.8)
A 		20.8
(0.1)
A 		8.8
(-3)
A 		23
B 15.9
(0.2)
A 		14.8
(-0.5)
A 		20.4
(3)
M 		10.9
(-3)
A 		10
C 23.6
(1.6)
A 		19
(-0.2)
A 		27.4
(3)
A 		11.4
(-3)
A 		16
avr 23.8
(3) 		15.8
(-0.6) 		22.9
(2.6) 		10.4
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 9.1
(-3)
A 		13.5
(-0.7)
A 		14.5
(-0.2)
A 		20.5
(3)
A 		11.1
(-1.9)
A 		14.9
(0.1)
A 		11
B 35.8
(1.9)
A 		19.8
(-2.7)
P 		19.8
(-2.7)
A 		18.6
(-3)
A 		39.8
(3)
P 		21.2
(-2.3)
P 		21
C 30.6
(3)
A 		18.1
(-0.6)
A 		20.9
(0.2)
A 		9.6
(-3)
A 		30.5
(3)
A 		23.2
(0.9)
P 		21
avr 25.2
(2) 		17.1
(-2.5) 		18.4
(-1.8) 		16.2
(-3) 		27.1
(3) 		19.8
(-1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186690_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.306
Sequence Type Exemplar sequence
Representative Public ID Y54E10A.1 NCBI
Target Description Y54E10A.1 /REP_DB=WormBase Gene ID /WP=CE24438 /TR=Q9N3E1 /GB=AAF60760.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058729(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058729 NCBI Caenorhabditis elegans Y54E10A.1 (Y54E10A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000033845 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3250639:3255562:1 11/11 None
SNAP00000033837 ENSEMBL cdna:SNAP chromosome:CEL140:I:3253090:3254448:1 9/11 None
Y54E10A.1 ENSEMBL cdna:known chromosome:CEL140:I:3250912:3255566:1 gene:Y54E10A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3250911-3255496(+) 98.87 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54E10A.1
Entrez Gene 171899 Entrez gene
SwissProt Q9N3E1 EMBL-EBI
WormBase CE24438 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60760 Hypothetical protein Y54E10A.1 [Caenorhabditis elegans] ref|NP_491130.1| Y54E10A.1 [Caenorhabditis elegans] 1.0E-165
blast AAF60760 Hypothetical protein Y54E10A.1 [Caenorhabditis elegans] ref|NP_491130.1| Y54E10A.1 [Caenorhabditis elegans] 1.0E-123
blast AAF60760 Hypothetical protein Y54E10A.1 [Caenorhabditis elegans] ref|NP_491130.1| Y54E10A.1 [Caenorhabditis elegans] 1.0E-116
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000033845 1 358-380
Sequence
Target Sequence 
>C. ELEGANS:186690_AT
ttcgatatctcgagctgtcttgccgaagcatctgtcgcgcatcttttgaccaaaaagatt
agaaaacgactcgacgagcacgtttcacatcgcatggctcaactgattggtgaacgtgtt
gaagagctcaaagattcgtggcatttgccaagtcgttcaactctgcaggtgcttttcgat
tgtcaactgattggagcaatgttccccagtgaaagaatgcgttcggtttgctcatcgatc
gaatctcatttggatccattcgacgtctctctactttctccacttttggcagctaatgtg
aagctggtttatacaagaactcaagttctcttctcgtgcctcgtcgctgacaccctatcc
agcaaagaagttcaactgccacaatcattctcaaagattcaagacgtttcagtgcacatt
gagcaaccttctcgtattccgatggtgccaagacttgacagaacgatgaatggtgataag
aagaatggtggagcaagactcaagaataacaagtatctggcgaatccgcaacaaggttcc
tcaaaaagcacaccatcgctgagcgcattctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGATATCTCGAGCTGTCTTGCCG 122 695 286 Antisense
TCTGTCGCGCATCTTTTGACCAAAA 453 607 316 Antisense
GAGCACGTTTCACATCGCATGGCTC 517 389 361 Antisense
GCATTTGCCAAGTCGTTCAACTCTG 64 309 426 Antisense
GTTCAACTCTGCAGGTGCTTTTCGA 530 445 440 Antisense
AAAGAATGCGTTCGGTTTGCTCATC 380 123 497 Antisense
TCATTTGGATCCATTCGACGTCTCT 93 621 531 Antisense
ACTTTCTCCACTTTTGGCAGCTAAT 260 103 558 Antisense
CAACCTTCTCGTATTCCGATGGTGC 488 185 709 Antisense
CGAATCCGCAACAAGGTTCCTCAAA 666 251 806 Antisense
CACACCATCGCTGAGCGCATTCTAC 534 193 834 Antisense
Sequence Source Affymetrix Proprietary Database