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[186689_s_at]

Description F45C12.15 /REP_DB=WormBase Gene ID /WP=CE10464 /TR=O16749 /GB=AAB66214.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 19.9
(-2.9)
A 		17.2
(-3)
A 		36.2
(-2)
A 		127.8
(3)
A 		111
B 49.9
(-3)
A 		105.5
(2.3)
A 		55.8
(-2.4)
A 		113.2
(3)
M 		63
C 42.8
(1.3)
A 		52.8
(2.8)
A 		13.7
(-3)
A 		54.5
(3)
A 		41
avr 37.5
(-2.8) 		58.5
(-0.8) 		35.2
(-3) 		98.5
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 26.1
(-3)
A 		37.2
(-2.4)
A 		108.3
(1.5)
A 		60.3
(-1.1)
A 		74.1
(-0.3)
A 		134.7
(3)
A 		109
B 63.3
(-2.5)
A 		66.4
(-2.4)
A 		101.2
(-0.8)
A 		52
(-3)
A 		72.6
(-2.1)
A 		186.4
(3)
P 		134
C 57.5
(-1.7)
A 		14.9
(-2.9)
A 		12.2
(-3)
A 		157.1
(1.2)
A 		86.5
(-0.8)
A 		219.4
(3)
P 		207
avr 49
(-2.6) 		39.5
(-3) 		73.9
(-1.5) 		89.8
(-0.9) 		77.7
(-1.4) 		180.2
(3) 		141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 7.3
(-1.6)
A 		3.7
(-3)
A 		9.5
(-0.7)
A 		18.7
(3)
A 		15
B 15.9
(-1.6)
A 		26
(3)
A 		12.9
(-3)
A 		24.1
(2.1)
M 		13
C 14.2
(2.4)
A 		15.2
(3)
A 		4.8
(-3)
A 		9.2
(-0.5)
A 		10
avr 12.5
(-0.5) 		15
(1.3) 		9.1
(-3) 		17.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 4.8
(-3)
A 		13.2
(-1.2)
A 		23.6
(1)
A 		15.3
(-0.8)
A 		22.4
(0.8)
A 		32.8
(3)
A 		28
B 22
(-2.1)
A 		22.1
(-2.1)
A 		24.6
(-1.8)
A 		13.8
(-3)
A 		29.5
(-1.3)
A 		69.5
(3)
P 		56
C 21.3
(-1.4)
A 		4.5
(-2.9)
A 		3.1
(-3)
A 		31.6
(-0.6)
A 		28
(-0.9)
A 		73.4
(3)
P 		70
avr 16
(-2.6) 		13.3
(-3) 		17.1
(-2.5) 		20.2
(-2.1) 		26.6
(-1.2) 		58.6
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186689_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4172
Sequence Type Exemplar sequence
Representative Public ID F45C12.15 NCBI
Target Description F45C12.15 /REP_DB=WormBase Gene ID /WP=CE10464 /TR=O16749 /GB=AAB66214.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061661(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061661 NCBI Caenorhabditis elegans F45C12.15 (F45C12.15) mRNA, complete cds. 11/11 None
SNAP00000033197 ENSEMBL cdna:SNAP chromosome:CEL140:II:1733857:1736426:-1 11/11 None
GENEFINDER00000033205 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1733857:1736426:-1 11/11 None
F45C12.15 ENSEMBL cdna:known chromosome:CEL140:II:1733788:1736446:-1 gene:F45C12.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1733855-1736425(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45C12.15
Entrez Gene 173541 Entrez gene
SwissProt O16749 EMBL-EBI
WormBase CE10464 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
6605 protein targeting inferred from electronic annotation QuickGO AmiGO
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66214 Hypothetical protein F45C12.15 [Caenorhabditis elegans] ref|NP_494062.1| F45C12.15 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 0.150000005960464
Pfam IPR001356 EMBL-EBI Homeobox 0.0012
Sequence
Target Sequence 
>C. ELEGANS:186689_S_AT
ggacaacatccgacttttcacagacttccaccagaaaaggaagcacccgtcacacgctga
cttccaaaatttgtcccgccaaaccggaagatctgttgagctaattcgccactggttctc
cttgaaaaatgagtcacaagagccagaaaagactacatcagtctctaggatctccccgat
tcctgtggaagatgccaagcaacaagtgatggagcttctgaagactgatagtaatccgag
cgtgtatctcaagagacagtgggccgagcaatttaatatttcaatgtgcatgatctccaa
ctggaaagccgagcttgaaaatcccgcaatcgccagagtgatggctgaaaggaagcgcac
ttctaatctggactatgcttctcggatattggagcaaaagtttgccaatagagcaaactt
gctgcccagtgatcttgtagatctagagaagactattggttggacacttgatgaaatttc
ggaatggttcgagactagggaaaaactacaggaacgtcgtgaatcgtctgaagctggccg
ggatttttcaagccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACAACATCCGACTTTTCACAGAC 26 527 1056 Antisense
GCTGACTTCCAAAATTTGTCCCGCC 237 295 1111 Antisense
TTGTCCCGCCAAACCGGAAGATCTG 565 667 1126 Antisense
CGCCACTGGTTCTCCTTGAAAAATG 253 255 1162 Antisense
GACTACATCAGTCTCTAGGATCTCC 567 373 1206 Antisense
ATCTCCCCGATTCCTGTGGAAGATG 163 31 1225 Antisense
AGCCGAGCTTGAAAATCCCGCAATC 223 83 1362 Antisense
GAAGCGCACTTCTAATCTGGACTAT 655 343 1407 Antisense
TCTGGACTATGCTTCTCGGATATTG 61 609 1422 Antisense
AGCAAACTTGCTGCCCAGTGATCTT 291 77 1467 Antisense
AGCTGGCCGGGATTTTTCAAGCCGA 648 1 1587 Antisense
Sequence Source Affymetrix Proprietary Database