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[186688_at]

Description R144.2 /REP_DB=WormBase Gene ID /WP=CE02032 /TR=SW:Q09345 /GB=AAK21453.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 37      4grp_high_8_8 > 09      6grp_total > 17      4grp_total > 29      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 225.5
(3)
P 		168.9
(-3)
P 		189.3
(-0.8)
P 		205.7
(0.9)
P 		57
B 191.1
(1.2)
P 		174.6
(0)
P 		217.4
(3)
P 		131.7
(-3)
P 		86
C 183.6
(0.5)
P 		220.1
(2.1)
A 		101.8
(-3)
P 		240.1
(3)
P 		138
avr 200.1
(3) 		187.9
(0.6) 		169.5
(-3) 		192.5
(1.5) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 229.5
(3)
P 		184
(-0.3)
P 		205.8
(1.3)
P 		183.8
(-0.3)
P 		147.1
(-3)
P 		220.9
(2.4)
P 		82
B 285.5
(3)
P 		201.9
(-0.9)
P 		205
(-0.8)
P 		166.2
(-2.6)
A 		157.4
(-3)
P 		208.3
(-0.6)
P 		128
C 229.2
(2.1)
P 		223.7
(1.7)
P 		240
(3)
A 		166.7
(-3)
P 		192.7
(-0.9)
P 		183.3
(-1.6)
P 		73
avr 248.1
(3) 		203.2
(-0.3) 		216.9
(0.7) 		172.2
(-2.5) 		165.7
(-3) 		204.2
(-0.2) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 82.1
(3)
P 		36.7
(-2.2)
P 		49.5
(-0.8)
P 		30.1
(-3)
P 		52
B 60.9
(3)
P 		43.1
(-0.3)
P 		50.4
(1.1)
P 		28.1
(-3)
P 		33
C 60.8
(2.5)
P 		63.3
(3)
A 		35.5
(-3)
P 		40.5
(-1.9)
P 		28
avr 67.9
(3) 		47.7
(-0.5) 		45.1
(-0.9) 		32.9
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 42.3
(-3)
P 		65.4
(3)
P 		44.8
(-2.4)
P 		46.6
(-1.9)
P 		44.4
(-2.5)
P 		53.8
(-0)
P 		23
B 99.4
(3)
P 		67.2
(-0.5)
P 		49.8
(-2.4)
P 		44
(-3)
A 		63.9
(-0.8)
P 		77.7
(0.6)
P 		55
C 85
(3)
P 		68.3
(1.1)
P 		61.1
(0.2)
A 		33.5
(-3)
P 		62.4
(0.4)
P 		61.3
(0.2)
P 		52
avr 75.6
(3) 		67
(1.5) 		51.9
(-1.2) 		41.4
(-3) 		56.9
(-0.3) 		64.3
(1) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186688_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6122
Sequence Type Exemplar sequence
Representative Public ID R144.2 NCBI
Target Description R144.2 /REP_DB=WormBase Gene ID /WP=CE02032 /TR=SW:Q09345 /GB=AAK21453.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065667(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065667 NCBI Caenorhabditis elegans R144.2a (R144.2) mRNA, complete cds. 11/11 None
SNAP00000019429 ENSEMBL cdna:SNAP chromosome:CEL140:III:5025366:5029304:1 11/11 None
GENEFINDER00000019439 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5025369:5030385:1 11/11 None
R144.2a ENSEMBL cdna:known chromosome:CEL140:III:5025369:5029596:1 gene:R144.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
246008 2 1 NM_065667 186688_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5025367-5029303(+) 100.0 100.0
Public Domain and Genome References
Ensembl R144.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498068 R144.2a [Caenorhabditis elegans] gb|AAK21453.1| Hypothetical protein R144.2a [Caenorhabditis elegans] sp|Q09345|YRR2_CAEEL Hypothetical protein R144.2 in chromosome III 0.0
blast CAE70080 Hypothetical protein CBG16521 [Caenorhabditis briggsae] 1.0E-167
blast CAE70080 Hypothetical protein CBG16521 [Caenorhabditis briggsae] 1.0E-166
blast NP_871691 R144.2b [Caenorhabditis elegans] gb|AAN65299.1| Hypothetical protein R144.2b [Caenorhabditis elegans] 1.0E-111
Sequence
Target Sequence 
>C. ELEGANS:186688_AT
aaacagcagaatataccaccaccaccatctgatccatctccaattggaagtggtgttgag
aagcgaagtgctccaccggcggccatcacagatttcaatattcgtctcttgcaaattcgt
tacgactcggtcgttgacgcgttgattaccaagagagccgacgcttgcaagttttgtgga
atgagattagatgattctcaaggaaagtcaaaagaatggcaagatcatatggattggcat
gtgaagcaaaatttggcacgccacgggtcgaacaattcggcagctgtaccatatcgtcag
tggtatccatcgacatccacttggcttacaccacgtgcatctgatgaaacgaatgagcaa
gaagctgataaacccgaggaaccacttccaggagtagcatcttccggtgttaaaaccaaa
gaatgttcagtttgtggtgagaagtttgacgagtattatgatgatgacgaggaaacgtgg
cgattaagggacacagttaatgttcacggaaagattgtgcattctgcgtgtgcttccgac
gcagctcgatcactcgacaactcatcattcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACAGCAGAATATACCACCACCAC 129 129 1873 Antisense
CACCATCTGATCCATCTCCAATTGG 480 201 1895 Antisense
TTGAGAAGCGAAGTGCTCCACCGGC 454 703 1928 Antisense
GAGAGCCGACGCTTGCAAGTTTTGT 490 393 2025 Antisense
AATTTGGCACGCCACGGGTCGAACA 666 173 2122 Antisense
ATTCGGCAGCTGTACCATATCGTCA 493 9 2147 Antisense
TATCCATCGACATCCACTTGGCTTA 301 657 2176 Antisense
GCTTACACCACGTGCATCTGATGAA 439 305 2196 Antisense
GAGTAGCATCTTCCGGTGTTAAAAC 181 399 2264 Antisense
AGATTGTGCATTCTGCGTGTGCTTC 575 65 2384 Antisense
ATCACTCGACAACTCATCATTCTTC 109 29 2421 Antisense
Sequence Source Affymetrix Proprietary Database