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[186686_s_at]

Description Y59E9AR.5 /REP_DB=WormBase Gene ID /WP=CE25515 /TR=Q9N2K7 /GB=AAF60830.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 18      6grp_total_sub > Hat      6grp_cgc > 63      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 5.5
(-3)
A 		49
(2.2)
A 		5.1
(-3)
A 		55.4
(3)
A 		50
B 18.3
(-3)
M 		51
(-0.2)
P 		44.3
(-0.8)
A 		89.5
(3)
P 		71
C 51.3
(-1.5)
P 		56.8
(-1.2)
A 		19.9
(-3)
A 		145.5
(3)
P 		126
avr 25
(-2.8) 		52.3
(-0.6) 		23.1
(-3) 		96.8
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 10.4
(-1.9)
A 		34.2
(3)
A 		27.4
(1.6)
A 		25.2
(1.2)
A 		5.5
(-2.9)
A 		4.8
(-3)
A 		29
B 5.1
(-3)
A 		65.2
(3)
A 		26.3
(-0.9)
A 		22.6
(-1.3)
A 		30.4
(-0.5)
A 		9.8
(-2.5)
A 		60
C 3.4
(-3)
A 		37.1
(2.9)
A 		6.3
(-2.5)
A 		25.5
(0.9)
A 		5.8
(-2.6)
A 		37.8
(3)
A 		34
avr 6.3
(-3) 		45.5
(3) 		20
(-0.9) 		24.4
(-0.2) 		13.9
(-1.8) 		17.5
(-1.3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 2
(-2.5)
A 		10.6
(3)
A 		1.3
(-3)
A 		8.1
(1.4)
A 		9
B 5.8
(-3)
M 		12.6
(0.1)
P 		10.3
(-1)
A 		19.1
(3)
P 		13
C 17
(0.4)
P 		16.3
(0.2)
A 		6.9
(-3)
A 		24.5
(3)
P 		18
avr 8.3
(-1.9) 		13.2
(0.8) 		6.2
(-3) 		17.2
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.9
(-2.6)
A 		12.2
(3)
A 		6
(-0.4)
A 		6.4
(-0.2)
A 		1.7
(-2.7)
A 		1.2
(-3)
A 		11
B 1.8
(-3)
A 		21.7
(3)
A 		6.4
(-1.6)
A 		6
(-1.7)
A 		12.4
(0.2)
A 		3.7
(-2.4)
A 		20
C 1.3
(-3)
A 		11.3
(2.3)
A 		1.6
(-2.8)
A 		5.1
(-1)
A 		1.9
(-2.7)
A 		12.7
(3)
A 		11
avr 1.7
(-3) 		15.1
(3) 		4.7
(-1.7) 		5.8
(-1.2) 		5.3
(-1.4) 		5.9
(-1.1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186686_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10663
Sequence Type Exemplar sequence
Representative Public ID Y59E9AR.5 NCBI
Target Description Y59E9AR.5 /REP_DB=WormBase Gene ID /WP=CE25515 /TR=Q9N2K7 /GB=AAF60830.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068349(11), NM_068348(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068349 NCBI Caenorhabditis elegans T BoX family member (tbx-30) (tbx-30) mRNA, complete cds. 11/11 None
NM_068348 NCBI Caenorhabditis elegans Y59E9AR.5 (Y59E9AR.5) mRNA, complete cds. 11/11 None
SNAP00000034126 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5232834:5233864:-1 11/11 None
SNAP00000034127 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5236511:5237541:1 11/11 None
GENEFINDER00000034138 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5236541:5237541:1 11/11 None
GENEFINDER00000034141 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5232834:5233834:-1 11/11 None
Y59E9AR.5 ENSEMBL cdna:known chromosome:CEL140:IV:5232834:5233864:-1 gene:Y59E9AR.5 11/11 None
Y59E9AR.3 ENSEMBL cdna:known chromosome:CEL140:IV:5236511:5237541:1 gene:Y59E9AR.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5236516-5237547(+) 100.0 100.0
chrIV:5232839-5233870(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Gene Symbol tbx-30
Ensembl Y59E9AR.5
Y59E9AR.3
Entrez Gene 190419 Entrez gene
190421 Entrez gene
SwissProt Q9N2K7 EMBL-EBI
WormBase CE25515 Wormbase
CE25515 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60830 Hypothetical protein Y59E9AR.5 [Caenorhabditis elegans] gb|AAF60829.1| T box family protein 30 [Caenorhabditis elegans] ref|NP_500749.1| Y59E9AR.5 [Caenorhabditis elegans] ref|NP_500750.1| T BoX family member (tbx-30) [Caenorhabditis elegans] sp|Q9N2K7|TBX30_CAEEL Putative T-box protein 1.0E-157
blast AAF60830 Hypothetical protein Y59E9AR.5 [Caenorhabditis elegans] gb|AAF60829.1| T box family protein 30 [Caenorhabditis elegans] ref|NP_500749.1| Y59E9AR.5 [Caenorhabditis elegans] ref|NP_500750.1| T BoX family member (tbx-30) [Caenorhabditis elegans] sp|Q9N2K7|TBX30_CAEEL Putative T-box protein 1.0E-151
blast CAB60541 Hypothetical protein Y73F8A.16 [Caenorhabditis elegans] ref|NP_502851.1| T BoX family member (tbx-39) [Caenorhabditis elegans] sp|Q9NA56|TBX39_CAEEL Putative T-box protein 1.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR001699 EMBL-EBI Transcription factor, T-box 2.6E-10
Pfam IPR001699 EMBL-EBI Transcription factor, T-box 2.6E-10
Sequence
Target Sequence 
>C. ELEGANS:186686_S_AT
caagtacgtgcctgtgcttacaatcaggaacctaacaaccggagaaattgcctcaaatat
ctttaaaatggaaattgctcaattcttcccagtttcaatttatcagcaagcttccatggg
aagatggaagtctgatttgaacaagcattcaacttttggaaataggtcagaaggtggaat
aaaaagaaaaacttctgatgcagctggacaactaccatcaaaaaggtcatcgaagaagcc
tgtaaagaaggatgttgtggataattctgaagttactctagaagtgaaaacgtctcaata
tcttgtgaatcaaaacgagagtaatctaactgagtatattccttcttctccactctattc
atcccaaaaccagtatcaatatccgttccatccatattctccatttgactcatctatccc
atatccatactctccaatggattactcttattacttcaatccaactttccaatcattttc
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGTACGTGCCTGTGCTTACAATC 114 181 417 Antisense
AGTTTCAATTTATCAGCAAGCTTCC 531 63 507 Antisense
GATGCAGCTGGACAACTACCATCAA 443 413 613 Antisense
AAAACGTCTCAATATCTTGTGAATC 211 131 703 Antisense
ACTGAGTATATTCCTTCTTCTCCAC 5 99 745 Antisense
AACCAGTATCAATATCCGTTCCATC 214 147 784 Antisense
CCATATTCTCCATTTGACTCATCTA 265 271 808 Antisense
CCATTTGACTCATCTATCCCATATC 208 271 817 Antisense
ATCCCATATCCATACTCTCCAATGG 165 39 832 Antisense
ATTACTCTTATTACTTCAATCCAAC 344 13 857 Antisense
CAATCCAACTTTCCAATCATTTTCC 668 179 873 Antisense
Sequence Source Affymetrix Proprietary Database