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[186685_at]

Description Y55F3AR.1 /REP_DB=WormBase Gene ID /WP=CE25492 /TR=Q9N356 /GB=AAF60807.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 72      6grp_total > 34      4grp_total > 59      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 399
1 2 3 4 range
A 434.4
(-0.1)
P 		552.4
(3)
P 		478.4
(1.1)
P 		323.2
(-3)
P 		229
B 429.5
(1.8)
P 		377.5
(0.8)
P 		496.4
(3)
P 		168
(-3)
P 		328
C 442.9
(0.3)
P 		567.3
(3)
P 		547.7
(2.6)
P 		287.3
(-3)
P 		280
avr 435.6
(1.3) 		499.1
(2.8) 		507.5
(3) 		259.5
(-3) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 522.6
(3)
P 		375
(-1.5)
P 		422.9
(-0)
P 		324.5
(-3)
P 		358.2
(-2)
P 		357.2
(-2)
P 		198
B 527.2
(3)
P 		472.1
(0.4)
P 		509.2
(2.2)
P 		397.6
(-3)
P 		503.2
(1.9)
P 		413.6
(-2.3)
P 		130
C 387.2
(-0.4)
P 		469.6
(3)
P 		418.4
(0.9)
P 		456.9
(2.5)
P 		323.8
(-3)
P 		445.6
(2)
P 		146
avr 479
(3) 		438.9
(0.2) 		450.2
(1) 		393
(-3) 		395.1
(-2.9) 		405.5
(-2.1) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 158.1
(3)
P 		119.9
(0.9)
P 		125.1
(1.2)
P 		47.3
(-3)
P 		111
B 137
(3)
P 		93.2
(0.4)
P 		115
(1.7)
P 		35.8
(-3)
P 		101
C 146.6
(1.1)
P 		163.1
(1.8)
P 		190.9
(3)
P 		48.4
(-3)
P 		143
avr 147.2
(3) 		125.4
(1.7) 		143.7
(2.8) 		43.8
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 96.3
(-1.4)
P 		133.4
(3)
P 		92.1
(-1.8)
P 		82.3
(-3)
P 		108.1
(0)
P 		87
(-2.4)
P 		51
B 183.4
(1.7)
P 		157.1
(0.1)
P 		123.6
(-1.9)
P 		105.3
(-3)
P 		204.5
(3)
P 		154.2
(-0)
P 		99
C 143.5
(2.4)
P 		143.3
(2.4)
P 		106.5
(-1.5)
P 		91.9
(-3)
P 		104.8
(-1.6)
P 		149.2
(3)
P 		57
avr 141.1
(2.6) 		144.6
(3) 		107.4
(-1.3) 		93.2
(-3) 		139.1
(2.4) 		130.1
(1.3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186685_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10537
Sequence Type Exemplar sequence
Representative Public ID Y55F3AR.1 NCBI
Target Description Y55F3AR.1 /REP_DB=WormBase Gene ID /WP=CE25492 /TR=Q9N356 /GB=AAF60807.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067636(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067636 NCBI Caenorhabditis elegans Y55F3AR.1 (Y55F3AR.1) mRNA, complete cds. 11/11 None
Y55F3AR.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:1097453:1102870:1 gene:Y55F3AR.1 11/11 None
Y55F3AR.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:1097456:1102953:1 gene:Y55F3AR.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002994 4/11 Cross Hyb Matching Probes None
GENEFINDER00000003005 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1097467-1100737(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55F3AR.1
Entrez Gene 176930 Entrez gene
SwissProt Q9N356 EMBL-EBI
WormBase CE31382 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60807 Hypothetical protein Y55F3AR.1 [Caenorhabditis elegans] ref|NP_500037.2| Y55F3AR.1 [Caenorhabditis elegans] 0.0
blast CAE63861 Hypothetical protein CBG08423 [Caenorhabditis briggsae] 1.0E-105
blast NP_776188 hypothetical protein LOC285521 [Homo sapiens] ref|NP_001028932.1| hypothetical protein LOC285521 [Homo sapiens] gb|AAY35061.1| mitochondrial COX18 [Homo sapiens] gb|AAY35060.1| mitochondrial COX18 [Homo sapiens] dbj|BAC04758.1| unnamed protein product [Homo sapiens] sp|Q8N8Q8|OXAL2_HUMAN Probable inner membrane protein OXA1L2, mitochondrial precursor 6.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500037.2 2 211-228,249-271
Y55F3AR.1.2 2 211-228,249-271
Y55F3AR.1.1 2 211-228,249-271
Sequence
Target Sequence 
>C. ELEGANS:186685_AT
gcccccgcatttcaatatgcttcagattgttatatagcacaatcaattcaatttggaatg
gaatctcttcatggattagggctctcatggcctggagcattcatttcagctgccattttg
ctcagaattggcacagctccattgcatatttatgcggaaaagttgtttgcaaataggctt
cacgcacagaattttttgactcaaggaattatgaagaaagtgagtgaacgatatcgtgta
caactgggaccctccacggacggcacaaagcttgaagtcaaatcatccgatccaaaaatc
gcaaaagccacccaagatgctcttcaagaagttccagctatgctcgccgagcacggactc
caggcggcgcggattcaaaatttgaaaatgtgcactgtacccgtttggatattctcctca
tttgctcttcgaaatgtcattaattcggatttccatccatctgtagctggacatctttgg
attccggatatgttggctccggatccgtattttattctgcccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCCCGCATTTCAATATGCTTCAG 182 287 136 Antisense
GATTAGGGCTCTCATGGCCTGGAGC 584 429 209 Antisense
GGCCTGGAGCATTCATTTCAGCTGC 207 541 224 Antisense
ATTTCAGCTGCCATTTTGCTCAGAA 17 17 238 Antisense
GAATTGGCACAGCTCCATTGCATAT 230 323 260 Antisense
CGATATCGTGTACAACTGGGACCCT 84 247 364 Antisense
GCAAAAGCCACCCAAGATGCTCTTC 239 319 436 Antisense
ATGTGCACTGTACCCGTTTGGATAT 535 49 523 Antisense
GATTTCCATCCATCTGTAGCTGGAC 481 427 583 Antisense
GTAGCTGGACATCTTTGGATTCCGG 567 457 598 Antisense
CGGATCCGTATTTTATTCTGCCCGT 416 243 635 Antisense
Sequence Source Affymetrix Proprietary Database