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[186684_s_at]

Description C48B4.7 /REP_DB=WormBase Gene ID /WP=CE00483 /TR=SW:P34361 /GB=CAA82379.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 432
1 2 3 4 range
A 153.2
(-2.4)
M 		107.3
(-3)
A 		250.3
(-1)
P 		539
(3)
P 		432
B 146.7
(-3)
A 		205.4
(-1.8)
M 		289.8
(-0.1)
M 		444.9
(3)
P 		298
C 159.1
(-3)
M 		232.8
(-1.5)
A 		249.8
(-1.2)
P 		463.1
(3)
P 		304
avr 153
(-3) 		181.8
(-2.5) 		263.3
(-1) 		482.3
(3) 		329

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1567
1 2 3 4 5 6 range
A 153.6
(-3)
A 		201.2
(-2.8)
P 		362.9
(-2.1)
P 		653.8
(-0.8)
P 		1320.3
(2.1)
P 		1527.4
(3)
P 		1374
B 129
(-3)
A 		205.5
(-2.7)
P 		258.9
(-2.5)
P 		663.6
(-1)
P 		1377.9
(1.8)
P 		1695.8
(3)
P 		1567
C 143.7
(-3)
A 		209.1
(-2.7)
P 		415.6
(-1.9)
P 		569
(-1.3)
P 		1117.4
(1)
P 		1608.4
(3)
P 		1465
avr 142.1
(-3) 		205.3
(-2.7) 		345.8
(-2.2) 		628.8
(-1) 		1271.9
(1.6) 		1610.5
(3) 		1468
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 55.8
(0.5)
M 		23.3
(-3)
A 		65.4
(1.5)
P 		78.9
(3)
P 		56
B 46.8
(-3)
A 		50.7
(-2.5)
M 		67.1
(-0.5)
M 		94.8
(3)
P 		48
C 52.7
(-3)
M 		66.9
(-0.5)
A 		87.1
(3)
P 		78.1
(1.4)
P 		34
avr 51.8
(-2.2) 		47
(-3) 		73.2
(1.3) 		83.9
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 604
1 2 3 4 5 6 range
A 28.3
(-3)
A 		71.6
(-2.3)
P 		79
(-2.2)
P 		165.8
(-0.8)
P 		398.4
(3)
P 		371.9
(2.6)
P 		370
B 44.9
(-3)
A 		68.4
(-2.8)
P 		62.9
(-2.8)
P 		175.8
(-1.7)
P 		559.8
(2.3)
P 		632.4
(3)
P 		588
C 53.3
(-3)
A 		63.8
(-2.9)
P 		105.8
(-2.4)
P 		114.4
(-2.2)
P 		361.6
(0.8)
P 		538.4
(3)
P 		485
avr 42.2
(-3) 		67.9
(-2.7) 		82.6
(-2.5) 		152
(-1.6) 		439.9
(2.1) 		514.2
(3) 		472
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186684_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7424
Sequence Type Exemplar sequence
Representative Public ID C48B4.7 NCBI
Target Description C48B4.7 /REP_DB=WormBase Gene ID /WP=CE00483 /TR=SW:P34361 /GB=CAA82379.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066709(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066709 NCBI Caenorhabditis elegans C48B4.7 (C48B4.7) mRNA, complete cds. 11/11 None
SNAP00000040759 ENSEMBL cdna:SNAP chromosome:CEL140:III:9558700:9559322:-1 11/11 None
GENEFINDER00000040770 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9558700:9559322:-1 11/11 None
C48B4.7 ENSEMBL cdna:known chromosome:CEL140:III:9558631:9559322:-1 gene:C48B4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9558695-9559318(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C48B4.7
Entrez Gene 176350 Entrez gene
SwissProt P34361 EMBL-EBI
WormBase CE00483 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82379 Hypothetical protein C48B4.7 [Caenorhabditis elegans] ref|NP_499110.1| C48B4.7 [Caenorhabditis elegans] sp|P34361|YLH7_CAEEL Hypothetical protein C48B4.7 in chromosome III 2.0E-77
blast CAE65179 Hypothetical protein CBG10051 [Caenorhabditis briggsae] 6.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499110.1 4 13-35,50-72,79-101,121-143
C48B4.7 4 13-35,50-72,79-101,121-143
SNAP00000040759 4 13-35,50-72,79-101,121-143
GENEFINDER00000040770 4 13-35,50-72,79-101,121-143
Sequence
Target Sequence 
>C. ELEGANS:186684_S_AT
atgacacatttcgagacgcgtcctctctgcagcttgaactctccattgctctgtggattc
ttcccgatcaagctcgcggttcttctcgtccagcttattgctatcgtgatccaattttgc
atgctctactataatggaaatcaggaagaaatcgttttcgttgcgatggttctcttgctc
gtctttactatctcttcctttgttgcattccttggcgaatatgggaccatgatggccatc
cattactatgtctcatgcattttgctcatctggccggctgtcgttttcatcatgaagctc
atcagtctctgtaacaaactgttcatcgaagaaaatgccacttcacgcgatgcgaaagat
ttcatgaagatcaccgcaattttgtttgccgtcattttctacatctggatgtgcctccaa
ctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACACATTTCGAGACGCGTCCTC 288 45 13 Antisense
TTGAACTCTCCATTGCTCTGTGGAT 264 705 46 Antisense
TCTTCTCGTCCAGCTTATTGCTATC 456 617 93 Antisense
GATCCAATTTTGCATGCTCTACTAT 587 415 120 Antisense
TTTTCGTTGCGATGGTTCTCTTGCT 282 677 167 Antisense
GATGGCCATCCATTACTATGTCTCA 37 407 243 Antisense
GTCTCATGCATTTTGCTCATCTGGC 446 467 262 Antisense
CCGGCTGTCGTTTTCATCATGAAGC 515 265 286 Antisense
GATCACCGCAATTTTGTTTGCCGTC 455 421 381 Antisense
TTTGCCGTCATTTTCTACATCTGGA 501 669 397 Antisense
TACATCTGGATGTGCCTCCAACTCA 23 645 412 Antisense
Sequence Source Affymetrix Proprietary Database