[Home] | [Total List]

[186683_at]

Description Y37E11B.2 /REP_DB=WormBase Gene ID /WP=CE19612 /TR=Q9TYN6 /GB=AAD12822.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 29      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 252.9
(2.1)
A 		183.2
(-1.6)
A 		157.6
(-3)
A 		270.7
(3)
A 		113
B 209.8
(0.3)
A 		252.3
(3)
A 		190.9
(-0.9)
A 		158.8
(-3)
A 		94
C 299.3
(2)
A 		216.7
(-0.4)
A 		126.5
(-3)
A 		334.9
(3)
A 		208
avr 254
(3) 		217.4
(0.7) 		158.3
(-3) 		254.8
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 315.6
(3)
A 		177.8
(-2)
A 		264.9
(1.2)
A 		239.9
(0.2)
A 		179.5
(-2)
A 		151
(-3)
A 		165
B 228.5
(-0.1)
A 		189
(-1.8)
A 		299.6
(3)
A 		193
(-1.7)
A 		203.8
(-1.2)
A 		162.3
(-3)
A 		137
C 127
(-3)
A 		275.6
(3)
A 		156.5
(-1.8)
A 		267.9
(2.7)
A 		133.9
(-2.7)
A 		172.4
(-1.2)
A 		149
avr 223.7
(1.7) 		214.1
(1) 		240.3
(3) 		233.6
(2.5) 		172.4
(-2.2) 		161.9
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 92.1
(3)
A 		39.8
(-3)
A 		41.2
(-2.8)
A 		39.6
(-3)
A 		53
B 66.9
(3)
A 		62.3
(2.2)
A 		44.2
(-1.1)
A 		33.8
(-3)
A 		33
C 99.1
(3)
A 		62.3
(-1)
A 		44.1
(-3)
A 		56.5
(-1.6)
A 		55
avr 86
(3) 		54.8
(-1.4) 		43.2
(-3) 		43.3
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 58.2
(1.9)
A 		63.2
(3)
A 		57.7
(1.8)
A 		60.8
(2.5)
A 		54.2
(1)
A 		36.8
(-3)
A 		26
B 79.5
(2.4)
A 		62.9
(-0.8)
A 		72.7
(1.1)
A 		51.1
(-3)
A 		82.8
(3)
A 		60.5
(-1.2)
A 		32
C 47.1
(-2)
A 		84.1
(3)
A 		39.8
(-3)
A 		53.9
(-1.1)
A 		43.3
(-2.5)
A 		57.7
(-0.6)
A 		44
avr 61.6
(0.2) 		70.1
(3) 		56.7
(-1.4) 		55.3
(-1.8) 		60.1
(-0.3) 		51.7
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186683_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10476
Sequence Type Exemplar sequence
Representative Public ID Y37E11B.2 NCBI
Target Description Y37E11B.2 /REP_DB=WormBase Gene ID /WP=CE19612 /TR=Q9TYN6 /GB=AAD12822.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067974
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067974 NCBI Caenorhabditis elegans Y37E11B.2 (Y37E11B.2) mRNA, complete cds. None
Y37E11B.2 ENSEMBL cdna:known chromosome:CEL140:IV:3578441:3579330:1 gene:Y37E11B.2 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3578095-3579087(+) 88.38 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E11B.2
Entrez Gene 189624 Entrez gene
SwissProt Q9TYN6 EMBL-EBI
WormBase CE36337 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12822 Hypothetical protein Y37E11B.2 [Caenorhabditis elegans] ref|NP_500375.2| Y37E11B.2 [Caenorhabditis elegans] 6.0E-43
Sequence
Target Sequence 
>C. ELEGANS:186683_AT
taattgtccctttttgccagtaaataaaaaaatttcaaaatttttttgttggtacatttt
ctctgttctctcttcctcctctcctctccaccaatttcgagtgtcattcgtattccaagg
gcgactgtgtgctgcccaattctttgattttatcgattttttatggattctactgatatt
tttcttcgacctggtctatatttacgatatggaatgtattcttaattggaaacttcggag
atatgcaatgcatagtagcagaacatgtatagattttataagattaaaaggacaacatag
tgttataatggctgcccaattctggagtagtgacagattgtcgatctcgactccgtcatt
gacccaaattgcctcaatgtgtgcctgcttctcctcatccgtgaaatcgtctcgtggcca
tccggatgttggaatggagactcttcttccacccgatcgagtcctgaacctgcaaccaag
atcaatgccttcgctgaaagtaagtgtaataataataagagacgtagacgtcgttcgttc
tttttcgtttagccttaccccatgcaatctcaacagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTGTCCCTTTTTGCCAGTAAAT 546 633 42 Antisense
TGTTGGTACATTTTCTCTGTTCTCT 300 563 88 Antisense
CCTCTCCACCAATTTCGAGTGTCAT 638 267 124 Antisense
GAGTGTCATTCGTATTCCAAGGGCG 463 401 140 Antisense
AAGGGCGACTGTGTGCTGCCCAATT 556 159 158 Antisense
TGATATTTTTCTTCGACCTGGTCTA 397 561 215 Antisense
ATGGCTGCCCAATTCTGGAGTAGTG 600 53 349 Antisense
AGATTGTCGATCTCGACTCCGTCAT 587 65 376 Antisense
CTCCGTCATTGACCCAAATTGCCTC 250 233 392 Antisense
TCATCCGTGAAATCGTCTCGTGGCC 64 621 436 Antisense
CTTACCCCATGCAATCTCAACAGGA 160 223 595 Antisense
Sequence Source Affymetrix Proprietary Database