[Home] | [Total List]

[186682_at]

Description R144.5 /REP_DB=WormBase Gene ID /WP=CE02035 /TR=SW:Q09346 /GB=AAK21454.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 95      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 82      6grp_total > 86      4grp_total > 15      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 345.1
(3)
P 		294.7
(0.1)
P 		241.6
(-3)
P 		344.9
(3)
P 		104
B 316.6
(3)
P 		196.2
(-3)
P 		233.8
(-1.1)
P 		314.3
(2.9)
P 		120
C 316.7
(3)
P 		205.3
(-3)
P 		288
(1.5)
P 		312.3
(2.8)
P 		111
avr 326.1
(3) 		232.1
(-3) 		254.5
(-1.6) 		323.8
(2.9) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 324.5
(-2.4)
P 		308.3
(-3)
P 		369.9
(-0.6)
P 		456.9
(2.7)
P 		408.7
(0.8)
P 		465.2
(3)
P 		157
B 335.9
(-1.1)
P 		258.1
(-3)
P 		435.9
(1.4)
P 		345.5
(-0.8)
P 		437
(1.5)
P 		499
(3)
P 		241
C 317.7
(-3)
P 		347.7
(-1.1)
P 		328.2
(-2.3)
P 		395.9
(2)
P 		375.6
(0.7)
P 		411.7
(3)
P 		94
avr 326
(-2.2) 		304.7
(-3) 		378
(-0.1) 		399.4
(0.7) 		407.1
(1) 		458.6
(3) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 125.7
(3)
P 		64
(-1.9)
P 		63.2
(-2)
P 		50.5
(-3)
P 		75
B 100.9
(3)
P 		48.4
(-3)
P 		54.2
(-2.3)
P 		67
(-0.9)
P 		53
C 104.9
(3)
P 		59
(-2.3)
P 		100.4
(2.5)
P 		52.7
(-3)
P 		52
avr 110.5
(3) 		57.1
(-3) 		72.6
(-1.2) 		56.7
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 59.8
(-3)
P 		109.6
(1.7)
P 		80.5
(-1)
P 		115.9
(2.3)
P 		123.3
(3)
P 		113.3
(2.1)
P 		64
B 116.9
(-1.1)
P 		85.9
(-3)
P 		105.8
(-1.8)
P 		91.5
(-2.7)
P 		177.6
(2.5)
P 		186.1
(3)
P 		100
C 117.8
(0.9)
P 		106.1
(-0.3)
P 		83.5
(-2.6)
P 		79.6
(-3)
P 		121.5
(1.3)
P 		137.8
(3)
P 		58
avr 98.2
(-2.1) 		100.5
(-1.9) 		89.9
(-3) 		95.7
(-2.4) 		140.8
(2.5) 		145.7
(3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186682_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7435
Sequence Type Exemplar sequence
Representative Public ID R144.5 NCBI
Target Description R144.5 /REP_DB=WormBase Gene ID /WP=CE02035 /TR=SW:Q09346 /GB=AAK21454.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065659(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065659 NCBI Caenorhabditis elegans R144.5 (R144.5) mRNA, complete cds. 10/11 None
SNAP00000019419 ENSEMBL cdna:SNAP chromosome:CEL140:III:4999345:5001255:1 10/11 None
R144.5 ENSEMBL cdna:known chromosome:CEL140:III:4999345:5001292:1 gene:R144.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019431 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4998915-5001254(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R144.5
Entrez Gene 187901 Entrez gene
SwissProt Q09346 EMBL-EBI
WormBase CE31581 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498060 R144.5 [Caenorhabditis elegans] gb|AAK21454.2| Hypothetical protein R144.5 [Caenorhabditis elegans] sp|Q09346|YRR5_CAEEL Hypothetical protein R144.5 in chromosome III 0.0
blast CAE70088 Hypothetical protein CBG16529 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498060.2 1 434-456
R144.5 1 434-456
SNAP00000019419 1 434-456
Sequence
Target Sequence 
>C. ELEGANS:186682_AT
tactcatggagctcttttctgtggacaccgtcccatcgcaactacatcaccagccgccac
tacaactttgccttggaacactgattcaggaaaatctgataatgataaaaacggagaaga
aactctaaaagaagtaactggacacctgggagatgtcatatttccattgctttgtggaga
agatttggtagtttgtggagcagaacagagaaagagtactgtagaagatatgctcgggaa
attgagcagagttgttccaagagaaagtgctcggaataataggcaatggattgggcgaag
tgctctcaagacgtttacctacgatggatcattgctagctggtctcaataagaaaagaaa
gttcccatctgatcgttccctggtcctttttataattgcctatttgacaaatatttgtca
gcttgcattcatctgtcgatatatgttcatcaaatctccgaactctatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTCATGGAGCTCTTTTCTGTGGA 311 645 993 Antisense
CGCCACTACAACTTTGCCTTGGAAC 508 257 1047 Antisense
GAAGTAACTGGACACCTGGGAGATG 424 333 1123 Antisense
GAGATGTCATATTTCCATTGCTTTG 162 397 1142 Antisense
GGATTGGGCGAAGTGCTCTCAAGAC 572 507 1280 Antisense
GTGCTCTCAAGACGTTTACCTACGA 434 479 1292 Antisense
ATGGATCATTGCTAGCTGGTCTCAA 559 51 1316 Antisense
AAGAAAGTTCCCATCTGATCGTTCC 408 151 1347 Antisense
TCCCTGGTCCTTTTTATAATTGCCT 14 597 1369 Antisense
GTCAGCTTGCATTCATCTGTCGATA 175 467 1409 Antisense
TTCATCAAATCTCCGAACTCTATCG 183 689 1438 Antisense
Sequence Source Affymetrix Proprietary Database