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[186681_at]

Description Y37E11B.6 /REP_DB=WormBase Gene ID /WP=CE19616 /TR=Q9TYN1 /GB=AAD12826.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 86      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 91      6grp_total > 76      4grp_total > 21      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 249.2
(3)
P 		162.3
(-1.6)
P 		136.5
(-3)
P 		180.2
(-0.7)
P 		113
B 166.1
(-3)
P 		210.2
(1.2)
P 		194.6
(-0.3)
P 		228.5
(3)
P 		62
C 189.2
(-2.5)
P 		201.5
(-1.2)
P 		184.4
(-3)
P 		240.2
(3)
P 		56
avr 201.5
(1) 		191.3
(-0.4) 		171.8
(-3) 		216.3
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 235
1 2 3 4 5 6 range
A 150.6
(-3)
P 		210.3
(-1.5)
P 		255.3
(-0.3)
P 		260.7
(-0.2)
P 		213.8
(-1.4)
P 		385.7
(3)
P 		235
B 171.8
(-3)
P 		208
(-1.3)
P 		224.3
(-0.5)
P 		218.2
(-0.8)
P 		271.5
(1.8)
P 		296.7
(3)
P 		125
C 173.7
(-3)
P 		186.8
(-2.6)
P 		186.9
(-2.6)
P 		243.1
(-0.9)
P 		249.1
(-0.7)
P 		371.2
(3)
P 		198
avr 165.4
(-3) 		201.7
(-1.8) 		222.2
(-1.2) 		240.7
(-0.6) 		244.8
(-0.4) 		351.2
(3) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 90.7
(3)
P 		35.2
(-2.2)
P 		35.7
(-2.1)
P 		26.4
(-3)
P 		64
B 53
(3)
P 		51.9
(2.2)
P 		45.1
(-3)
P 		48.7
(-0.3)
P 		8
C 62.6
(2.6)
P 		57.9
(1.4)
P 		64.3
(3)
P 		40.5
(-3)
P 		24
avr 68.8
(3) 		48.3
(-1.1) 		48.4
(-1) 		38.5
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 27.8
(-3)
P 		74.8
(1.3)
P 		55.6
(-0.5)
P 		66.1
(0.5)
P 		64.5
(0.3)
P 		93.9
(3)
P 		66
B 59.8
(-2.4)
P 		69.2
(-1.4)
P 		54.5
(-3)
P 		57.8
(-2.6)
P 		110.3
(3)
P 		110.6
(3)
P 		56
C 64.4
(-1.7)
P 		57
(-2.3)
P 		47.6
(-3)
P 		48.9
(-2.9)
P 		80.6
(-0.4)
P 		124.3
(3)
P 		77
avr 50.7
(-3) 		67
(-1.3) 		52.6
(-2.8) 		57.6
(-2.3) 		85.1
(0.5) 		109.6
(3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186681_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10439
Sequence Type Exemplar sequence
Representative Public ID Y37E11B.6 NCBI
Target Description Y37E11B.6 /REP_DB=WormBase Gene ID /WP=CE19616 /TR=Q9TYN1 /GB=AAD12826.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067979(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067979 NCBI Caenorhabditis elegans Y37E11B.6 (Y37E11B.6) mRNA, complete cds. 11/11 None
SNAP00000044694 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3594256:3599234:-1 9/11 None
GENEFINDER00000044701 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3598712:3599234:-1 11/11 None
Y37E11B.6 ENSEMBL cdna:known chromosome:CEL140:IV:3598712:3599234:-1 gene:Y37E11B.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3598717-3599240(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E11B.6
Entrez Gene 189625 Entrez gene
SwissProt Q9TYN1 EMBL-EBI
WormBase CE19616 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD12825 Hypothetical protein Y37E11B.5 [Caenorhabditis elegans] ref|NP_500379.1| Y37E11B.5 [Caenorhabditis elegans] 0.0
blast CAE63785 Hypothetical protein CBG08326 [Caenorhabditis briggsae] 0.0
blast NP_064560 dihydrouridine synthase 3-like [Homo sapiens] gb|AAH09973.1| Dihydrouridine synthase 3-like [Homo sapiens] 1.0E-139
blast AAD12826 Hypothetical protein Y37E11B.6 [Caenorhabditis elegans] ref|NP_500380.1| Y37E11B.6 [Caenorhabditis elegans] 3.0E-56
blast CAE63784 Hypothetical protein CBG08325 [Caenorhabditis briggsae] 5.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR001269 EMBL-EBI Protein of unknown function UPF0034 1.5E-54
Sequence
Target Sequence 
>C. ELEGANS:186681_AT
agttgggctatgcgcgagccgaacatctccatcgatgtgcgatttttctgtcaaaactcg
gctccaaaaacaacgacggattctccaaaacgagccggcacgtttcaaagctctgccgac
aggttatggacacggaaatggtgcatttggactgcgagcagaagcagcaattttgcaaaa
tttgccgggaggttctcgtcggaaattacgaaaaaaccgaaatctctgtgaaacaacgcg
gatctgtcaccgagaagtgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTGGGCTATGCGCGAGCCGAACA 495 55 74 Antisense
GAGCCGAACATCTCCATCGATGTGC 65 387 89 Antisense
ATCGATGTGCGATTTTTCTGTCAAA 267 37 104 Antisense
TTTCTGTCAAAACTCGGCTCCAAAA 52 671 118 Antisense
GACGGATTCTCCAAAACGAGCCGGC 403 375 148 Antisense
GAGCCGGCACGTTTCAAAGCTCTGC 502 385 165 Antisense
AAAGCTCTGCCGACAGGTTATGGAC 539 123 180 Antisense
GAAATGGTGCATTTGGACTGCGAGC 205 361 208 Antisense
TTGCCGGGAGGTTCTCGTCGGAAAT 396 701 255 Antisense
ATCTCTGTGAAACAACGCGGATCTG 374 31 295 Antisense
CGCGGATCTGTCACCGAGAAGTGCG 445 255 310 Antisense
Sequence Source Affymetrix Proprietary Database