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[186680_s_at]

Description C27A7.2 /REP_DB=WormBase Gene ID /WP=CE08404 /TR=SW:P90756 /GB=CAB02786.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 26.2
(-2.2)
A 		60.9
(3)
P 		20.8
(-3)
A 		59.4
(2.8)
A 		40
B 0.6
(-3)
A 		40.9
(3)
P 		36.7
(2.4)
A 		1.6
(-2.9)
A 		40
C 2.2
(-3)
A 		27.2
(1.3)
A 		36.9
(3)
P 		36.3
(2.9)
A 		35
avr 9.7
(-3) 		43
(3) 		31.5
(0.9) 		32.4
(1.1) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 13.8
(-0.3)
A 		17.8
(0.8)
A 		26.5
(3)
P 		3.4
(-3)
A 		5.1
(-2.5)
A 		3.3
(-3)
A 		23
B 11.6
(3)
A 		0.5
(-3)
A 		7.8
(0.9)
A 		7.3
(0.7)
A 		0.9
(-2.8)
A 		8
(1.1)
A 		11
C 6.8
(3)
A 		1.9
(-1.7)
A 		1
(-2.5)
A 		1.9
(-1.7)
A 		1.5
(-2)
A 		0.5
(-3)
A 		6
avr 10.7
(2.3) 		6.7
(-0.3) 		11.8
(3) 		4.2
(-1.9) 		2.5
(-3) 		3.9
(-2.1) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.6
(0.2)
A 		13.2
(3)
P 		5.4
(-3)
A 		8.7
(-0.5)
A 		8
B 0.2
(-3)
A 		10.1
(3)
P 		8.5
(2)
A 		0.3
(-2.9)
A 		10
C 0.7
(-3)
A 		7.8
(0.5)
A 		12.9
(3)
P 		6.1
(-0.3)
A 		12
avr 3.5
(-3) 		10.4
(3) 		8.9
(1.7) 		5
(-1.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.5
(-1.1)
A 		6.3
(3)
A 		5.8
(2.5)
P 		0.9
(-2.9)
A 		1.5
(-2.2)
A 		0.8
(-3)
A 		6
B 4
(3)
A 		0.2
(-3)
A 		1.9
(-0.3)
A 		1.9
(-0.3)
A 		0.4
(-2.7)
A 		3
(1.4)
A 		4
C 2.5
(3)
A 		0.6
(-2)
A 		0.3
(-2.7)
A 		0.4
(-2.5)
A 		0.5
(-2.2)
A 		0.2
(-3)
A 		2
avr 3
(3) 		2.4
(1.4) 		2.7
(2.2) 		1.1
(-2.2) 		0.8
(-3) 		1.3
(-1.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186680_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14630
Sequence Type Exemplar sequence
Representative Public ID C27A7.2 NCBI
Target Description C27A7.2 /REP_DB=WormBase Gene ID /WP=CE08404 /TR=SW:P90756 /GB=CAB02786.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073644(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073644 NCBI Caenorhabditis elegans C27A7.2 (C27A7.2) mRNA, complete cds. 11/11 A 
SNAP00000042921 ENSEMBL cdna:SNAP chromosome:CEL140:V:12141642:12142911:1 11/11 None
GENEFINDER00000042929 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12136156:12146826:1 11/11 None
C27A7.2 ENSEMBL cdna:known chromosome:CEL140:V:12140839:12142866:1 gene:C27A7.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12140647-12142911(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C27A7.2
Entrez Gene 179664 Entrez gene
SwissProt P90756 EMBL-EBI
WormBase CE31886 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02786 Hypothetical protein C27A7.2 [Caenorhabditis elegans] ref|NP_506045.2| C27A7.2 [Caenorhabditis elegans] sp|P90756|YE1J_CAEEL Hypothetical protein C27A7.2 in chromosome V 0.0
blast T19496 hypothetical protein C27A7.2 - Caenorhabditis elegans 0.0
blast CAB02784 Hypothetical protein C27A7.1 [Caenorhabditis elegans] ref|NP_506044.1| C27A7.1 [Caenorhabditis elegans] 0.0
blast CAB02785 Hypothetical protein C27A7.3 [Caenorhabditis elegans] ref|NP_506046.1| C27A7.3 [Caenorhabditis elegans] 0.0
blast CAE75400 Hypothetical protein CBG23390 [Caenorhabditis briggsae] 0.0
blast CAB02786 Hypothetical protein C27A7.2 [Caenorhabditis elegans] ref|NP_506045.2| C27A7.2 [Caenorhabditis elegans] sp|P90756|YE1J_CAEEL Hypothetical protein C27A7.2 in chromosome V 1.0E-135
blast AAF98634 Hypothetical protein T22D1.1 [Caenorhabditis elegans] ref|NP_501069.1| T22D1.1 [Caenorhabditis elegans] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.1E-111
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 8.6E-123
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 1.0E-126
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:186680_S_AT
tccaaatattgatttctatttcccaattatattcaaatgctacttgaaacagttttatgg
acgtgaaataacagaatgccctaatgctgagaaatgtgtacttccacagagatctgatta
caagtgtatgcatacagatgccgaatatgtgtctggtccttcaacaaaaccgcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAAATATTGATTTCTATTTCCCA 17 589 1317 Antisense
TTTCTATTTCCCAATTATATTCAAA 69 673 1329 Antisense
AAATGCTACTTGAAACAGTTTTATG 218 119 1351 Antisense
GGACGTGAAATAACAGAATGCCCTA 179 525 1375 Antisense
GAATGCCCTAATGCTGAGAAATGTG 439 331 1390 Antisense
AATGCTGAGAAATGTGTACTTCCAC 477 165 1399 Antisense
ATGTGTACTTCCACAGAGATCTGAT 662 49 1410 Antisense
CAGAGATCTGATTACAAGTGTATGC 292 205 1423 Antisense
AGTGTATGCATACAGATGCCGAATA 481 59 1439 Antisense
ATGCCGAATATGTGTCTGGTCCTTC 93 41 1454 Antisense
GTCTGGTCCTTCAACAAAACCGCTA 428 469 1467 Antisense
Sequence Source Affymetrix Proprietary Database