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[186679_at]

Description C27A7.2 /REP_DB=WormBase Gene ID /WP=CE08404 /TR=SW:P90756 /GB=CAB02786.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 43      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 1.5
(-3)
A 		34.4
(3)
A 		2.2
(-2.9)
A 		4.9
(-2.4)
A 		33
B 11.7
(-1)
A 		33.2
(3)
A 		18.5
(0.2)
A 		1.3
(-3)
A 		32
C 7.4
(-3)
A 		40.2
(3)
P 		11.2
(-2.3)
A 		25.2
(0.3)
A 		33
avr 6.9
(-3) 		35.9
(3) 		10.6
(-2.2) 		10.5
(-2.3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 12.3
(2.8)
A 		2.4
(-3)
A 		7
(-0.3)
A 		11.7
(2.4)
A 		3.4
(-2.4)
A 		12.7
(3)
A 		10
B 1.7
(-2.9)
A 		0.9
(-3)
A 		37.2
(3)
P 		16.3
(-0.5)
A 		2.6
(-2.7)
A 		0.9
(-3)
A 		36
C 0.8
(-3)
A 		16.5
(2.5)
A 		17.9
(3)
A 		4.5
(-1.7)
A 		1.2
(-2.9)
A 		12.3
(1)
A 		17
avr 4.9
(-2.2) 		6.6
(-1.6) 		20.7
(3) 		10.8
(-0.2) 		2.4
(-3) 		8.6
(-1) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.6
(-3)
A 		7.5
(3)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		7
B 3.7
(-0.4)
A 		8.2
(3)
A 		4.3
(0)
A 		0.3
(-3)
A 		8
C 2.4
(-3)
A 		11.6
(3)
P 		3.9
(-2)
A 		4.3
(-1.8)
A 		9
avr 2.2
(-2.7) 		9.1
(3) 		2.9
(-2.1) 		1.8
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.3
(0.8)
A 		0.9
(-3)
A 		1.5
(-1.4)
A 		3
(2.7)
A 		1
(-2.7)
A 		3.1
(3)
A 		2
B 0.6
(-2.8)
A 		0.3
(-3)
A 		9
(3)
P 		4.3
(-0.2)
A 		1.1
(-2.4)
A 		0.3
(-3)
A 		9
C 0.3
(-3)
A 		5
(3)
A 		4.5
(2.4)
A 		0.9
(-2.2)
A 		0.4
(-2.9)
A 		4.1
(1.9)
A 		5
avr 1.1
(-2.6) 		2.1
(-1.1) 		5
(3) 		2.7
(-0.3) 		0.8
(-3) 		2.5
(-0.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186679_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14630
Sequence Type Exemplar sequence
Representative Public ID C27A7.2 NCBI
Target Description C27A7.2 /REP_DB=WormBase Gene ID /WP=CE08404 /TR=SW:P90756 /GB=CAB02786.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073644(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073644 NCBI Caenorhabditis elegans C27A7.2 (C27A7.2) mRNA, complete cds. 10/11 None
SNAP00000042921 ENSEMBL cdna:SNAP chromosome:CEL140:V:12141642:12142911:1 11/11 None
GENEFINDER00000042929 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12136156:12146826:1 11/11 None
C27A7.2 ENSEMBL cdna:known chromosome:CEL140:V:12140839:12142866:1 gene:C27A7.2 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12140647-12142911(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C27A7.2
Entrez Gene 179664 Entrez gene
SwissProt P90756 EMBL-EBI
WormBase CE31886 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02786 Hypothetical protein C27A7.2 [Caenorhabditis elegans] ref|NP_506045.2| C27A7.2 [Caenorhabditis elegans] sp|P90756|YE1J_CAEEL Hypothetical protein C27A7.2 in chromosome V 0.0
blast T19496 hypothetical protein C27A7.2 - Caenorhabditis elegans 0.0
blast CAB02784 Hypothetical protein C27A7.1 [Caenorhabditis elegans] ref|NP_506044.1| C27A7.1 [Caenorhabditis elegans] 0.0
blast CAB02785 Hypothetical protein C27A7.3 [Caenorhabditis elegans] ref|NP_506046.1| C27A7.3 [Caenorhabditis elegans] 0.0
blast CAE75400 Hypothetical protein CBG23390 [Caenorhabditis briggsae] 0.0
blast CAB02786 Hypothetical protein C27A7.2 [Caenorhabditis elegans] ref|NP_506045.2| C27A7.2 [Caenorhabditis elegans] sp|P90756|YE1J_CAEEL Hypothetical protein C27A7.2 in chromosome V 1.0E-135
blast AAF98634 Hypothetical protein T22D1.1 [Caenorhabditis elegans] ref|NP_501069.1| T22D1.1 [Caenorhabditis elegans] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.1E-111
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 8.6E-123
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 1.0E-126
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:186679_AT
ggctaaacaaccaaatacaacttctttggtatatggtagaagggaacatgaatttgtgaa
agctgaaacgttatccgatttcaatttctatgaattggtatcgagtttaaaatcatctct
tgtcaaagcaggaaaagtaattgtaaaaccagaattgcacaattccaaaacccaacaacg
aggtaagtgccgaataaacaatgtaaaattcccacatcttgttcatgttcaacgtccagt
tcaaaaacatggaaacaatggaattaagaatttatggaaatttcatttttctgaatttaa
tgagacaattcacaaagaagacgttaaagcaattgatgctgatattcaaagaatgaaaaa
tctcccaactatttcagatattggtaaacttcttccaaatattgatttctatttcccaat
tatattcaaatgctacttgaaacagttttatggacgtgaaataacagaatgccctaatgc
tgagaaatgtgtacttccacagagatctgattacaagtgtatgcatacagatgccgaata
tgtgtctggtccttcaacaaaaccgctaacttttcattactttaagaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTAAACAACCAAATACAACTTCT 294 537 924 Antisense
TACAACTTCTTTGGTATATGGTAGA 186 643 939 Antisense
TGTGAAAGCTGAAACGTTATCCGAT 73 555 978 Antisense
GAAACGTTATCCGATTTCAATTTCT 685 357 988 Antisense
GGTATCGAGTTTAAAATCATCTCTT 576 505 1020 Antisense
AAATCATCTCTTGTCAAAGCAGGAA 524 117 1033 Antisense
AATTGCACAATTCCAAAACCCAACA 700 173 1076 Antisense
CCCAACAACGAGGTAAGTGCCGAAT 222 1 1094 Antisense
GTAAAATTCCCACATCTTGTTCATG 409 461 1126 Antisense
GTTCATGTTCAACGTCCAGTTCAAA 337 445 1144 Antisense
GCTAACTTTTCATTACTTTAAGAAT 195 301 1488 Antisense
Sequence Source Affymetrix Proprietary Database