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[186678_s_at]

Description F36H12.10 /REP_DB=WormBase Gene ID /WP=CE09981 /TR=Q9TZQ1 /GB=AAC26934.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 53
(-0.5)
A 		38
(-3)
A 		40.9
(-2.5)
A 		73.8
(3)
P 		36
B 41.5
(-2.2)
A 		39.8
(-3)
A 		53.2
(3)
A 		43.2
(-1.5)
A 		13
C 36.5
(-3)
A 		86.6
(2.7)
A 		48.3
(-1.6)
A 		88.8
(3)
M 		52
avr 43.7
(-3) 		54.8
(-0.3) 		47.5
(-2.1) 		68.6
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 84.3
(-2)
A 		39.5
(-3)
A 		56.9
(-2.6)
A 		84.3
(-2)
A 		170.5
(-0.2)
P 		317.1
(3)
P 		278
B 35.9
(-2.6)
A 		66
(-1.8)
A 		18.2
(-3)
A 		51.5
(-2.2)
A 		219.5
(2)
P 		261.2
(3)
P 		243
C 42.2
(-2.8)
A 		48.7
(-2.6)
A 		71.4
(-2)
A 		36.2
(-3)
A 		155.8
(0.5)
P 		241.6
(3)
P 		205
avr 54.1
(-2.9) 		51.4
(-2.9) 		48.8
(-3) 		57.3
(-2.8) 		181.9
(0.6) 		273.3
(3) 		225
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 19.3
(3)
A 		8.2
(-3)
A 		10.7
(-1.6)
A 		10.8
(-1.6)
P 		11
B 13.2
(3)
A 		9.8
(-2.1)
A 		12.3
(1.7)
A 		9.2
(-3)
A 		4
C 12.1
(-3)
A 		24.9
(3)
A 		16.8
(-0.8)
A 		15
(-1.6)
M 		13
avr 14.9
(3) 		14.3
(1.9) 		13.3
(0) 		11.7
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 15.5
(-2.7)
A 		14
(-2.9)
A 		12.4
(-3)
A 		21.4
(-2.2)
A 		51.5
(0.6)
P 		77.2
(3)
P 		65
B 12.5
(-2.5)
A 		22
(-1.9)
A 		4.4
(-3)
A 		13.6
(-2.4)
A 		89.2
(2.5)
P 		97.4
(3)
P 		93
C 15.6
(-2.3)
A 		14.8
(-2.4)
A 		18.2
(-2.1)
A 		7.3
(-3)
A 		50.4
(0.5)
P 		80.9
(3)
P 		74
avr 14.5
(-2.8) 		16.9
(-2.6) 		11.7
(-3) 		14.1
(-2.8) 		63.7
(1.2) 		85.2
(3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186678_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10432
Sequence Type Exemplar sequence
Representative Public ID F36H12.10 NCBI
Target Description F36H12.10 /REP_DB=WormBase Gene ID /WP=CE09981 /TR=Q9TZQ1 /GB=AAC26934.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068355(11), NM_068317(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068355 NCBI Caenorhabditis elegans F36H12.10 (F36H12.10) mRNA, complete cds. 11/11 None
NM_068317 NCBI Caenorhabditis elegans C02B10.6 (C02B10.6) mRNA, complete cds. 11/11 None
SNAP00000002635 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5253430:5254729:-1 11/11 None
GENEFINDER00000002662 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5253430:5254729:-1 11/11 None
SNAP00000004587 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5070921:5072219:1 11/11 None
GENEFINDER00000004599 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5070921:5075052:1 11/11 None
C02B10.6 ENSEMBL cdna:known chromosome:CEL140:IV:5070921:5072219:1 gene:C02B10.6 11/11 None
F36H12.10 ENSEMBL cdna:known chromosome:CEL140:IV:5253430:5254729:-1 gene:F36H12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5070926-5072225(+) 91.48 99.92
chrIV:5253435-5254735(-) 91.56 100.0
Public Domain and Genome References
Gene Title

Ensembl C02B10.6
F36H12.10
Entrez Gene 177279 Entrez gene
185396 Entrez gene
SwissProt O44448 EMBL-EBI
Q9TZQ1 EMBL-EBI
WormBase CE20481 Wormbase
CE09981 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC26934 Hypothetical protein F36H12.10 [Caenorhabditis elegans] ref|NP_500756.1| F36H12.10 [Caenorhabditis elegans] 0.0
blast AAK68680 Hypothetical protein C02B10.6 [Caenorhabditis elegans] ref|NP_500718.1| C02B10.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.7E-91
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.7E-90
Sequence
Target Sequence 
>C. ELEGANS:186678_S_AT
tcaaatgcgctcagtactggccagctgctcaaggcgaaaagcttactctgaagagtggtt
gtgtcgtggagaacgtgtcgggctcgaagccaatggagagggacccggagattcagatca
ctatgctcaaccttacttatagtggtggtcagacgatgtccgttcgtcatcttcaatgga
ctgagtggccggatcgtggagtcccaccttgtaagctaacaagcttggagctgctttccg
caatccgcggatccaaggttccaatcgtcgtgcactgttctgccgggattgggcgtaccg
ggaccatcgtcgccatcgaatacattcttgagaagatcgccgagaacaagccgtgccctc
cgatgcctgagcttgtgaaggcactccgtgatcaaagggccttctcaatccagaacgatg
tccagtacctcttcattcaccgtgtcatgctcaactacttcctcgagaagtacaaggaaa
agtatgcggctttgctgacagcggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAATGCGCTCAGTACTGGCCAGC 149 629 647 Antisense
GAGAACGTGTCGGGCTCGAAGCCAA 472 391 715 Antisense
GATCACTATGCTCAACCTTACTTAT 45 421 762 Antisense
GACGATGTCCGTTCGTCATCTTCAA 337 379 798 Antisense
GATCGTGGAGTCCCACCTTGTAAGC 544 415 838 Antisense
AATCCGCGGATCCAAGGTTCCAATC 540 167 888 Antisense
TGTTCTGCCGGGATTGGGCGTACCG 441 481 922 Antisense
GGCACTCCGTGATCAAAGGGCCTTC 611 535 1026 Antisense
TCCAGAACGATGTCCAGTACCTCTT 627 589 1055 Antisense
CTTCATTCACCGTGTCATGCTCAAC 510 221 1077 Antisense
GTATGCGGCTTTGCTGACAGCGGAA 286 455 1128 Antisense
Sequence Source Affymetrix Proprietary Database