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[186677_s_at]

Description Y32H12A.2 /REP_DB=WormBase Gene ID /WP=CE24199 /TR=Q9N540 /GB=AAF60487.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 82      6grp_total > 67      4grp_total > 63      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 402.5
(3)
P 		313.4
(-3)
P 		356.6
(-0.1)
P 		324.3
(-2.3)
P 		89
B 398.6
(3)
P 		290.5
(-2.5)
P 		341.9
(0.1)
P 		281.3
(-3)
P 		117
C 434
(3)
P 		304.8
(-3)
P 		371.1
(0.1)
P 		329.5
(-1.9)
P 		129
avr 411.7
(3) 		302.9
(-3) 		356.5
(-0) 		311.7
(-2.5) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 313
1 2 3 4 5 6 range
A 323.7
(0.4)
P 		266.5
(-3)
P 		301.4
(-0.9)
P 		282.1
(-2.1)
P 		308.2
(-0.5)
P 		368.4
(3)
P 		102
B 356.1
(-1.1)
P 		322
(-2.2)
P 		421.9
(1.1)
P 		298.9
(-3)
P 		392.3
(0.1)
P 		478.2
(3)
P 		179
C 319.4
(-1.5)
P 		296
(-1.9)
P 		239.4
(-3)
P 		459.5
(1.2)
P 		261.1
(-2.6)
P 		552
(3)
P 		313
avr 333.1
(-1.7) 		294.8
(-3) 		320.9
(-2.1) 		346.8
(-1.2) 		320.5
(-2.1) 		466.2
(3) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 146.6
(3)
P 		68
(-1.8)
P 		93.2
(-0.2)
P 		47.5
(-3)
P 		99
B 127.1
(3)
P 		71.7
(-1.9)
P 		79.2
(-1.3)
P 		59.9
(-3)
P 		67
C 143.7
(3)
P 		87.6
(-0.8)
P 		129.4
(2)
P 		55.6
(-3)
P 		88
avr 139.1
(3) 		75.8
(-1.5) 		100.6
(0.3) 		54.3
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 59.7
(-3)
P 		94.8
(3)
P 		65.6
(-2)
P 		71.6
(-1)
P 		93
(2.7)
P 		89.7
(2.1)
P 		35
B 123.9
(-0.3)
P 		107.2
(-1.3)
P 		102.5
(-1.6)
P 		79.2
(-3)
P 		159.4
(1.9)
P 		178.3
(3)
P 		99
C 118.4
(-0.2)
P 		90.3
(-1.6)
P 		60.9
(-3)
P 		92.4
(-1.5)
P 		84.5
(-1.9)
P 		184.8
(3)
P 		124
avr 100.7
(-1) 		97.4
(-1.3) 		76.3
(-3) 		81.1
(-2.6) 		112.3
(-0.1) 		150.9
(3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186677_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7349
Sequence Type Exemplar sequence
Representative Public ID Y32H12A.2 NCBI
Target Description Y32H12A.2 /REP_DB=WormBase Gene ID /WP=CE24199 /TR=Q9N540 /GB=AAF60487.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065743(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065743 NCBI Caenorhabditis elegans Y32H12A.2 (Y32H12A.2) mRNA, complete cds. 11/11 None
SNAP00000037238 ENSEMBL cdna:SNAP chromosome:CEL140:III:5346259:5349316:-1 11/11 None
GENEFINDER00000037253 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5346316:5349316:-1 10/11 None
Y32H12A.2.2 ENSEMBL cdna:known chromosome:CEL140:III:5346094:5349323:-1 gene:Y32H12A.2 11/11 None
Y32H12A.2.1 ENSEMBL cdna:known chromosome:CEL140:III:5346094:5349352:-1 gene:Y32H12A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5346257-5349315(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y32H12A.2
Entrez Gene 175735 Entrez gene
SwissProt Q9N540 EMBL-EBI
WormBase CE24199 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249181_AT expressed protein at
CANINE:1591431_AT similar to Protein C22orf19 (NF2/meningioma region protein pK1.3) (Placental protein 39.2) cfa
CANINE:1586367_AT similar to Protein C22orf19 (NF2/meningioma region protein pK1.3) (Placental protein 39.2) cfa
CANINE_2:CFA.6836.1.A1_AT similar to Protein C22orf19 (NF2/meningioma region protein pK1.3) (Placental protein 39.2) cfa
CANINE_2:CFA.6836.1.A1_S_AT similar to Protein C22orf19 (NF2/meningioma region protein pK1.3) (Placental protein 39.2) cfa
CANINE_2:CFA.6836.2.A1_AT similar to Protein C22orf19 (NF2/meningioma region protein pK1.3) (Placental protein 39.2) cfa
CANINE_2:CFAAFFX.19072.1.S1_AT similar to Protein C22orf19 (NF2/meningioma region protein pK1.3) (Placental protein 39.2) cfa
DROSOPHILA_2:1635668_AT dm
DROSGENOME1:154045_AT dm
CHICKEN:GGAAFFX.12981.1.S1_S_AT similar to Protein C22orf19 (NF2/meningioma region protein pK1.3) (Placental protein 39.2) gga
HG-U133_PLUS_2:209419_AT chromosome 22 open reading frame 19 hs
HG-U133A_2:209419_AT chromosome 22 open reading frame 19 hs
HG-U133A:209419_AT chromosome 22 open reading frame 19 hs
HU35KSUBA:L18972_AT chromosome 22 open reading frame 19 hs
HUGENEFL:L18972_AT chromosome 22 open reading frame 19 hs
HG-U133A:209418_S_AT chromosome 22 open reading frame 19 hs
HG-U133_PLUS_2:209418_S_AT chromosome 22 open reading frame 19 hs
HG-FOCUS:209418_S_AT chromosome 22 open reading frame 19 hs
HG-U133A_2:209418_S_AT chromosome 22 open reading frame 19 hs
U133_X3P:G4589609_3P_X_AT chromosome 22 open reading frame 19 hs
U133_X3P:G13177658_3P_A_AT chromosome 22 open reading frame 19 hs
HG-U95AV2:40383_AT chromosome 22 open reading frame 19 hs
MG-U74BV2:109128_AT Fms interacting protein mm
MOE430B:1452672_AT Fms interacting protein mm
MOUSE430_2:1452672_AT Fms interacting protein mm
MU19KSUBB:TC34119_AT Fms interacting protein, mRNA (cDNA clone MGC:49541 IMAGE:3995737) mm
MU19KSUBC:TC41664_AT Fms interacting protein, mRNA (cDNA clone MGC:49541 IMAGE:3995737) mm
RG-U34B:RC_AI070029_AT Fms interacting protein (predicted) rn
RG-U34C:RC_AI236054_AT Fms interacting protein (predicted) rn
RAE230A:1374878_AT Fms interacting protein (predicted) rn
RAT230_2:1374878_AT Fms interacting protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAF60487 Hypothetical protein Y32H12A.2 [Caenorhabditis elegans] ref|NP_498144.1| Y32H12A.2 [Caenorhabditis elegans] 0.0
blast CAE56852 Hypothetical protein CBG24679 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:186677_S_AT
aaatcagtggatccgaaggcgaaactgatcgaattggagcaacagagcatttgagaaaag
tgatcacaacgattagaacgagaatatccaatcgtgcagtacttgatggaattattcgag
atttggaatctaagaaaactgacgatttgaatttggaaccagaagtgaaaattaattcct
tcaagatttgtgatgatgaatcttttattgcttcaattccaacaagccttacgaagaaaa
tttcaaattccgcagcaaccgacagattttcatataaaattgaggcttccgatggaaatg
gcagaaaactcactgcttatatctcaattcccgccgactatccacgacacactgcacttt
ttggaattgctgctccagaagattccgaatcaagtacagaagttgccagacaaattgagg
atcgtctgaacactgaagctcactatgttgatgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCAGTGGATCCGAAGGCGAAAC 617 115 1334 Antisense
GAGAATATCCAATCGTGCAGTACTT 505 391 1413 Antisense
CTTCAATTCCAACAAGCCTTACGAA 171 219 1544 Antisense
AATTTCAAATTCCGCAGCAACCGAC 201 173 1572 Antisense
GCAGCAACCGACAGATTTTCATATA 321 313 1585 Antisense
TGAGGCTTCCGATGGAAATGGCAGA 538 565 1614 Antisense
ACTCACTGCTTATATCTCAATTCCC 306 101 1641 Antisense
ATCCACGACACACTGCACTTTTTGG 278 41 1673 Antisense
ACTTTTTGGAATTGCTGCTCCAGAA 390 103 1689 Antisense
GGATCGTCTGAACACTGAAGCTCAC 109 513 1752 Antisense
ACTGAAGCTCACTATGTTGATGATG 506 97 1765 Antisense
Sequence Source Affymetrix Proprietary Database