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[186675_at]

Description C56G7.2 /REP_DB=WormBase Gene ID /WP=CE01532 /TR=SW:Q09291 /GB=CAA86770.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 11.8
(1.7)
A 		4
(-3)
A 		7.5
(-0.9)
A 		13.9
(3)
A 		10
B 21.4
(3)
A 		3.2
(-3)
A 		4.3
(-2.6)
A 		6.2
(-2)
A 		18
C 18.3
(-1)
A 		17
(-1.2)
A 		1.4
(-3)
A 		53.1
(3)
A 		52
avr 17.2
(0.8) 		8.1
(-1.9) 		4.4
(-3) 		24.4
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 32.3
(3)
A 		10.9
(-2)
A 		7.2
(-2.8)
A 		15.3
(-1)
A 		14.8
(-1.1)
A 		6.5
(-3)
A 		26
B 8.9
(-0.9)
A 		2.9
(-2.7)
A 		22.5
(3)
A 		2.1
(-2.9)
A 		1.7
(-3)
A 		1.8
(-3)
A 		21
C 2.4
(-2.5)
A 		7.9
(1.8)
A 		9.5
(3)
A 		3.2
(-1.8)
A 		2.9
(-2.1)
A 		1.7
(-3)
A 		8
avr 14.5
(3) 		7.2
(-0.9) 		13.1
(2.3) 		6.9
(-1.1) 		6.5
(-1.3) 		3.3
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.3
(3)
A 		0.9
(-3)
A 		2
(-1.1)
A 		2
(-1.1)
A 		3
B 6.8
(3)
A 		0.8
(-3)
A 		1
(-2.8)
A 		1.3
(-2.5)
A 		6
C 6.1
(1)
A 		4.9
(0.1)
A 		0.5
(-3)
A 		9
(3)
A 		9
avr 5.7
(3) 		2.2
(-1.7) 		1.2
(-3) 		4.1
(0.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 6
(3)
A 		3.9
(0.1)
A 		1.6
(-3)
A 		3.9
(0.1)
A 		4.5
(1)
A 		1.6
(-3)
A 		4
B 3.1
(0.1)
A 		1
(-2.5)
A 		5.5
(3)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		0.7
(-2.9)
A 		5
C 0.9
(-2)
A 		2.4
(3)
A 		2.4
(3)
A 		0.6
(-3)
A 		0.9
(-2)
A 		0.6
(-3)
A 		2
avr 3.3
(3) 		2.4
(0.7) 		3.2
(2.7) 		1.7
(-1.2) 		2
(-0.4) 		1
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186675_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6621
Sequence Type Exemplar sequence
Representative Public ID C56G7.2 NCBI
Target Description C56G7.2 /REP_DB=WormBase Gene ID /WP=CE01532 /TR=SW:Q09291 /GB=CAA86770.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065297(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065297 NCBI Caenorhabditis elegans C56G7.2 (C56G7.2) mRNA, complete cds. 11/11 None
GENEFINDER00000009580 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3378553:3388865:-1 11/11 None
SNAP00000009576 ENSEMBL cdna:SNAP chromosome:CEL140:III:3386675:3388865:-1 9/11 None
C56G7.2 ENSEMBL cdna:known chromosome:CEL140:III:3386896:3388865:-1 gene:C56G7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3386895-3388865(-) 97.28 100.0
Public Domain and Genome References
Gene Title
Ensembl C56G7.2
Entrez Gene 183872 Entrez gene
SwissProt Q09291 EMBL-EBI
WormBase CE01532 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86770 Hypothetical protein C56G7.2 [Caenorhabditis elegans] ref|NP_497698.1| C56G7.2 [Caenorhabditis elegans] sp|Q09291|YQL2_CAEEL Hypothetical protein C56G7.2 in chromosome III 0.0
blast CAA86773 Hypothetical protein F45H7.6 [Caenorhabditis elegans] emb|CAA84325.1| Hypothetical protein F45H7.6 [Caenorhabditis elegans] ref|NP_497697.1| F45H7.6 [Caenorhabditis elegans] 0.0
blast CAE65019 Hypothetical protein CBG09857 [Caenorhabditis briggsae] 0.0
blast CAE65020 Hypothetical protein CBG09858 [Caenorhabditis briggsae] 5.0E-77
blast CAE65020 Hypothetical protein CBG09858 [Caenorhabditis briggsae] 6.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 1.2E-10
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 9.1E-8
Pfam IPR000569 EMBL-EBI HECT domain (Ubiquitin-protein ligase) 5.6E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497698.1 1 344-366
C56G7.2 1 344-366
Sequence
Target Sequence 
>C. ELEGANS:186675_AT
gaacgcctatcgatttttcaaaccaactacggagttgagaggaatacgttgaactttgca
cagagttttgattggatttgtgataacttggaaatcaagaatattcatattggagcggat
gttttggagcccaaaatggttcaaaaaaccaatggagaatttgatattaaactttgtgca
cggagatttgagcaggttcttacaatggatcacatctacttgcaacatgccgactggata
acatcggaagatctattgaatctggacgttcagactgcgatgctcatcgagaataatcta
accgagcaggacttgaacgcgttcatcaaacagtggctgagatctgactctgataagttg
tggtggctggaagtgaaagggaaaatgatgtttaatcgagaagaagttttgaaagatttg
gatgtacaagatgatgcatatagaagtcttaataccagatggtatgtagcgcggcggagc
cgcgccaacccttcgggtaatgggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGCCTATCGATTTTTCAAACCA 630 325 493 Antisense
TGGAGCGGATGTTTTGGAGCCCAAA 94 547 603 Antisense
GCAGGTTCTTACAATGGATCACATC 581 311 684 Antisense
GGATCACATCTACTTGCAACATGCC 532 511 699 Antisense
GCAACATGCCGACTGGATAACATCG 599 319 714 Antisense
TGGACGTTCAGACTGCGATGCTCAT 521 547 755 Antisense
AACCGAGCAGGACTTGAACGCGTTC 147 145 792 Antisense
GAACGCGTTCATCAAACAGTGGCTG 267 347 807 Antisense
ACAGTGGCTGAGATCTGACTCTGAT 535 107 822 Antisense
CAGATGGTATGTAGCGCGGCGGAGC 175 205 948 Antisense
GCGCCAACCCTTCGGGTAATGGGTG 514 255 974 Antisense
Sequence Source Affymetrix Proprietary Database